MXO01043.5prime Sequence
886 bp (846 high quality bases) assembled on 2006-12-21
> MXO01043.5prime
CAGTCGACATGAAAACCCCCGTTTCCGCTGCTGCGAACTTAAGTATTCAG
AATGCTGGCAGTTCCGGAGCAACTGCCATTCAGATCATACCTAAAACCGA
GCCCGTTGGAGAAGAAGGCCCCATGTCACTGGACTTTCAGTCGCCGAACC
TGAACACATCCACCCCGAATCCTAACAAGCGTCCCGGCTCGCTGGATCTG
AACAGCAAGAGTGCCAAGAACAAGCGCATCTTCGCACCACTGGTCATCAA
CTCACCGGATCTGTCATCCAAGACGGTAAACACACCCGATTTGGAGAAGA
TCCTGCTATCCAACAATCTGATGCAAACACCGCAGCCGGGAAAGGTGTTC
CCCACCAAGGCGGGGCCCGTCACCGTGGAGCAGTTGGACTTCGGCAGGGG
ATTCGAGGAGGCCTTACACAATCTTCACACTAACTCCCAGGCATTTCCGT
CCGCCAATTCCGCCGCTAATTCCGCCGCCAATAACACAACTGCGGCAGCC
ATGACAGCGGTGAACAATGGCATCAGCGGAGGCACCTTCACCTACACCAA
CATGACCGAGGGCTTCTCGGTGATTAAGGACGAGCCCGTCAATCAAGCCA
GCTCGCCCACCGTTAATCCCATTGACATGGAAGCGCAGGAGAAGATCAAG
CTGGAGCGCAAGAGGCAGCGTAACCGTGTGGCTGCATCCAAGTGCCGCAA
GCGCAAGTTGGAGCGCATCTCANAGCTGGAGGATCGCGTGAAGGTACTTA
AGGGCGAGAACGTCGACCTGGCTAGCATCGTGAAGAACCTCAAGGACCAT
GTGGCGCAGCTGAAGCAGCAGGTGATGGAGCACATTGCCGCGGGCTGCAC
GGTGCCGCCGAACTCGACAGACCCAAGCAGCTTTCT
MXO01043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2275-PB | 870 | Jra-RB | 1..865 | 9..873 | 4306 | 99.8 | Plus |
| CG2275-PA | 870 | Jra-RA | 1..865 | 9..873 | 4306 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jra-RC | 1525 | CG2275-RC | 234..1100 | 7..873 | 4324 | 99.9 | Plus |
| Jra-RA | 1525 | CG2275-RA | 234..1100 | 7..873 | 4324 | 99.9 | Plus |
| Jra-RB | 1565 | CG2275-RB | 274..1140 | 7..873 | 4324 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10097265..10098131 | 7..873 | 4324 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:37:53 has no hits.
MXO01043.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:13 Download gff for
MXO01043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jra-PB | 1..870 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:43 Download gff for
MXO01043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2275-PA | 1..870 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:54 Download gff for
MXO01043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2275-RA | 219..1093 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:52 Download gff for
MXO01043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jra-RB | 268..1142 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:04 Download gff for
MXO01043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jra-RB | 268..1142 | 1..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:04 Download gff for
MXO01043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10097259..10098133 | 1..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:52 Download gff for
MXO01043.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5984764..5985638 | 1..876 | 99 | | Plus |
