Clone MXO01044 Report

Search the DGRC for MXO01044

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:44
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG8314-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01044.5prime Sequence

903 bp (770 high quality bases) assembled on 2006-12-21

> MXO01044.5prime
CAGTCGACATGAACTACTCGTACTCCGCGCTGTCGCCCGGCGGTAGCGGA
GGATTCGGTGGCGTTGACCAGCACAACCGATGTTGCGGAAACAAGGCCTG
GTGCGTCAAGGACATCTGCGGCATTGTGTGCGTAATCATGACCTGGCTGC
TTATCCTGTTCGCCGAATTCGTGGTCATGCGGCTGATCCTTCTGCCCAGC
AACTATACCGTCTTCAGTACCATCAACATGATCATATTCCAGGCACTCGC
CTTCCTGGCCTTCGCCTCGCACATACGCACAATGCTCTCGGATCCGGGCG
CTGTACCGCGCGGAAATGCCACCAAGGAGATGATCGAGCAGATGGGCTAC
CGCGAGGGTCAGATGTTCTACAAGTGCCCCAAGTGCTGCAGTATCAAGCC
GGAACGAGCTCATCACTGTTCCGTCTGCCAGCGCTGCATCCGCAAGATGG
ATCACCACTGTCCGTGGGTAAATAATTGCGTGGGCGAGAACAATCAAAAG
TACTTTGTGCTCTTCACCTTCTATATCGCTTCGATCTCCGTGCACACGCT
CTTCCTGGTGCTCACCCAGTTCGCGGAGTGCGTGAAAAACGACTGGCGCA
CCTGCTCGCCGTACTCTCCGCCGGCCACTATATTCCTGCTGCTTTTTCTC
ACCTTTGAGGGCCTTATGTTCGGCATATTCACCATCATCATGCTGGCCAC
TCAGCTGACGGCTATCCTAAACGATCAGACGGGCATCGAACAGCTGAAGA
AGGAGGAGGCCCGCTGGGCGAAGAAATCGCGCCTCAAGAGCATCCAGTCG
GTGTTCGGACGCTTCTCGTTGGCCTGGTTTTCACCATTCACGGAGCCCTC
GTGCCGCACAAGATTCAACTCGCACTTCTATTCAGTCGCAAGCTTTCTAG
ACC

MXO01044.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8314-PA 882 CG8314-RA 1..879 9..887 4395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8314-RA 1280 CG8314-RA 140..1019 8..887 4400 100 Plus
CG5880-RA 1526 CG5880-RA 587..662 409..484 200 84.2 Plus
Dnz1-RA 1949 CG6627-RA 705..806 404..505 180 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15990858..15991147 297..8 1450 100 Minus
2R 25286936 2R 15990452..15990674 518..296 1115 100 Minus
2R 25286936 2R 15990169..15990382 732..519 1070 100 Minus
2R 25286936 2R 15989944..15990100 887..731 785 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:37:59 has no hits.

MXO01044.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:15 Download gff for MXO01044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8314-PA 1..882 9..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:43 Download gff for MXO01044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8314-PA 1..882 9..890 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:56 Download gff for MXO01044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8314-RA 129..1015 1..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:57 Download gff for MXO01044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8314-RA 133..1019 1..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:07 Download gff for MXO01044.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8314-RA 133..1019 1..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:07 Download gff for MXO01044.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15989944..15990099 732..887 100 <- Minus
2R 15990170..15990382 519..731 100 <- Minus
2R 15990452..15990673 297..518 100 <- Minus
2R 15990859..15991150 1..296 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:57 Download gff for MXO01044.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11877449..11877604 732..887 100 <- Minus
arm_2R 11877675..11877887 519..731 100 <- Minus
arm_2R 11877957..11878178 297..518 100 <- Minus
arm_2R 11878364..11878655 1..296 98   Minus