MXO01045.5prime Sequence
842 bp (669 high quality bases) assembled on 2006-12-21
> MXO01045.5prime
CAGTCGACATGGATAAGTTAAATTCCACTCTAACTGCCGTCAAAAACCTG
CGGTCCAACGTAAGGCTGTGCTTCGAGCACCTGGCCGATGGAACCGATGG
GGAGAGCGGCGAGGAGAGCCGGAATAAGTTCGTAAATGACTTCCAGGAGA
GATTCGCAGCCATCAACTCGCAAATACGTGAGGTAGAGCAGCTGATTAAT
GGACTGCCGGTGCCACCAACACCCTATTCTCTCGGGAACACCGCCTACCT
GGCGCAGGAAACTTCGCAGGATCGACAGGCTCTATACCCTCAGCTGGTGA
ACAGCTACAAGTGGATGGACAAGGTGCACGACCACAGCTTCTTGGCCTTC
AACAATCTCAACCAGAACACACTCAGGCGCTCCTACAATTACTGCTCGCA
GAAGCGCCAGCGACTGCCCTTCTCGTCCTTCAACAACGATCCAGACCACA
TAGATAAGCTCCTGAGTGAGATCAACACCCCTCCGCATACTTCGTACAGA
ATTTTTCGTCCCTTCGGCACAAACGCTGTCACCATCGTAACAATAAGTAA
CGTGATGAAGGCGGCTATTGTCTTCAAAGGAGTGCTTATAGAGTGGGTTA
CGGTTAAGGGATTCGATGAGCCGCTGGAGCATGACGACCTGTGGGCCGAG
TCACGTTACGAGGTGTTCCGCATAGTCCAGGATCATGCTCACTCAGCAAT
GCTGCATTTCTTTTCGCCGACGTTGCCCGATCTGGCAGTGAAAAGCTATA
TAACCTGGCTGATCAGCCACGTCAAACTTTTCCTGGAGCCCTGCAAGCGT
TGTGGGAAATTCGTGGTGAACGGATTGCCTCCGACGTGACGG
MXO01045.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1245-PA | 882 | MED27-RA | 1..830 | 9..838 | 4100 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED27-RA | 1080 | CG1245-RA | 68..901 | 9..842 | 4125 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5655761..5656157 | 446..842 | 1940 | 99.2 | Plus |
| 3R | 32079331 | 3R | 5655433..5655700 | 178..445 | 1340 | 100 | Plus |
| 3R | 32079331 | 3R | 5655206..5655375 | 9..178 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:26 has no hits.
MXO01045.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:17 Download gff for
MXO01045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED27-PA | 1..834 | 9..842 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:44 Download gff for
MXO01045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1245-PA | 1..834 | 9..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:27:59 Download gff for
MXO01045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1245-RA | 58..895 | 5..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:32 Download gff for
MXO01045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED27-RA | 64..901 | 5..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:03 Download gff for
MXO01045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED27-RA | 64..901 | 5..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:03 Download gff for
MXO01045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5655202..5655375 | 5..178 | 98 | -> | Plus |
| 3R | 5655434..5655700 | 179..445 | 100 | -> | Plus |
| 3R | 5655761..5656157 | 446..842 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:32 Download gff for
MXO01045.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1480924..1481097 | 5..178 | 98 | -> | Plus |
| arm_3R | 1481156..1481422 | 179..445 | 100 | -> | Plus |
| arm_3R | 1481483..1481879 | 446..842 | 99 | | Plus |
