MXO01046.5prime Sequence
856 bp (814 high quality bases) assembled on 2006-12-21
> MXO01046.5prime
CAGTCGACATGCCCTCGGCCATCAGTGGCGCGCCACATGCCCACATACCC
AGCAACGAGGAGTGCGGCATCCGCGATGTGTGGAAGCAAAACCTGGAGGA
GGAGTTCCGCACCATACGGAAAGTGGTGCAGAAGTACCACTATGTGGCCA
TGGACACCGAGTTTCCAGGCGTGGTAGCACGTCCAGTCGGCGAGTTCCGC
TCCACGGCGGACTATCATTACCAGCTGCTGCGCTGTAATGTCGATCTGCT
GCGGATTATCCAATTGGGCCTTACCTTCATGGACGACGATGGAAAGACAC
CACCCGGCTACTCCACCTGGCAGTTCAACTTCAAGTTTAACCTGAGCGAG
GACATGTATGCGCAGGACTCGATCGATCTGCTGCAGAACTCCGGAATTCA
GTTCAAGAAGCACGAGGAGGATGGCATCGATCCCATCGACTTCGCCGAAC
TGCTGATGAGCTCTGGCATCGTGCTGGTGGAAAACATCAAGTGGCTGTGC
TTCCACTCCGGCTACGATTTTGGCTACCTTCTAAAGCTGCTCACCGATCA
GAACCTGCCCCCGGACGAATCTGAATTTTTCGATCTGCTGCACATCTACT
TTCCCAACATCTTCGACATCAAGTATCTGATGAAGTCGTGCAAGAACCTG
AAAGGCGGCCTGCAGGAGGTTGCCGATCAGCTGGAACTGCGGCGCGTGGG
CCCCCAGCATCAGGCCGGCTCGGATGCTCTGCTGACGGGCATGGCCTTCT
TCAAAATGCGTGAGATGTTCTTCGAGGACAACATCGACCATGCGAAGTAC
TCCGGACACCTGTACGGCCTGGGTACCTCCTTCATCGTCNATGGCACCAA
CTTCCA
MXO01046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5684-PC | 882 | CG5684-RC | 1..848 | 9..856 | 4221 | 99.8 | Plus |
CG5684-PA | 894 | CG5684-RA | 13..860 | 9..856 | 4221 | 99.8 | Plus |
CG5684-PB | 882 | CG5684-RB | 1..848 | 9..856 | 4221 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pop2-RB | 1893 | CG5684-RB | 539..1386 | 9..856 | 4229 | 99.9 | Plus |
Pop2-RA | 1688 | CG5684-RA | 334..1181 | 9..856 | 4229 | 99.9 | Plus |
Pop2-RC | 1827 | CG5684-RC | 473..1320 | 9..856 | 4229 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12000273..12000692 | 764..345 | 2100 | 100 | Minus |
3L | 28110227 | 3L | 12000750..12001087 | 346..9 | 1690 | 100 | Minus |
3L | 28110227 | 3L | 11998905..11998998 | 856..763 | 459 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:58:26 has no hits.
MXO01046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:19 Download gff for
MXO01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PC | 1..847 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:44 Download gff for
MXO01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-PB | 1..847 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:01 Download gff for
MXO01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5684-RC | 471..1317 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:17 Download gff for
MXO01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 473..1319 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:07 Download gff for
MXO01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pop2-RC | 473..1319 | 9..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:07 Download gff for
MXO01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11998906..11998996 | 765..855 | 98 | <- | Minus |
3L | 12000273..12000690 | 347..764 | 100 | <- | Minus |
3L | 12000750..12001093 | 1..346 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:17 Download gff for
MXO01046.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11992006..11992096 | 765..855 | 98 | <- | Minus |
arm_3L | 11993373..11993790 | 347..764 | 100 | <- | Minus |
arm_3L | 11993850..11994193 | 1..346 | 99 | | Minus |