Clone MXO01046 Report

Search the DGRC for MXO01046

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:46
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptPop2-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01046.5prime Sequence

856 bp (814 high quality bases) assembled on 2006-12-21

> MXO01046.5prime
CAGTCGACATGCCCTCGGCCATCAGTGGCGCGCCACATGCCCACATACCC
AGCAACGAGGAGTGCGGCATCCGCGATGTGTGGAAGCAAAACCTGGAGGA
GGAGTTCCGCACCATACGGAAAGTGGTGCAGAAGTACCACTATGTGGCCA
TGGACACCGAGTTTCCAGGCGTGGTAGCACGTCCAGTCGGCGAGTTCCGC
TCCACGGCGGACTATCATTACCAGCTGCTGCGCTGTAATGTCGATCTGCT
GCGGATTATCCAATTGGGCCTTACCTTCATGGACGACGATGGAAAGACAC
CACCCGGCTACTCCACCTGGCAGTTCAACTTCAAGTTTAACCTGAGCGAG
GACATGTATGCGCAGGACTCGATCGATCTGCTGCAGAACTCCGGAATTCA
GTTCAAGAAGCACGAGGAGGATGGCATCGATCCCATCGACTTCGCCGAAC
TGCTGATGAGCTCTGGCATCGTGCTGGTGGAAAACATCAAGTGGCTGTGC
TTCCACTCCGGCTACGATTTTGGCTACCTTCTAAAGCTGCTCACCGATCA
GAACCTGCCCCCGGACGAATCTGAATTTTTCGATCTGCTGCACATCTACT
TTCCCAACATCTTCGACATCAAGTATCTGATGAAGTCGTGCAAGAACCTG
AAAGGCGGCCTGCAGGAGGTTGCCGATCAGCTGGAACTGCGGCGCGTGGG
CCCCCAGCATCAGGCCGGCTCGGATGCTCTGCTGACGGGCATGGCCTTCT
TCAAAATGCGTGAGATGTTCTTCGAGGACAACATCGACCATGCGAAGTAC
TCCGGACACCTGTACGGCCTGGGTACCTCCTTCATCGTCNATGGCACCAA
CTTCCA

MXO01046.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5684-PC 882 CG5684-RC 1..848 9..856 4221 99.8 Plus
CG5684-PA 894 CG5684-RA 13..860 9..856 4221 99.8 Plus
CG5684-PB 882 CG5684-RB 1..848 9..856 4221 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
Pop2-RB 1893 CG5684-RB 539..1386 9..856 4229 99.9 Plus
Pop2-RA 1688 CG5684-RA 334..1181 9..856 4229 99.9 Plus
Pop2-RC 1827 CG5684-RC 473..1320 9..856 4229 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12000273..12000692 764..345 2100 100 Minus
3L 28110227 3L 12000750..12001087 346..9 1690 100 Minus
3L 28110227 3L 11998905..11998998 856..763 459 98.9 Minus
Blast to na_te.dros performed on 2014-11-28 21:58:26 has no hits.

MXO01046.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:19 Download gff for MXO01046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-PC 1..847 9..855 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:44 Download gff for MXO01046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-PB 1..847 9..855 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:01 Download gff for MXO01046.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5684-RC 471..1317 9..855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:17 Download gff for MXO01046.5prime
Subject Subject Range Query Range Percent Splice Strand
Pop2-RC 473..1319 9..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:07 Download gff for MXO01046.5prime
Subject Subject Range Query Range Percent Splice Strand
Pop2-RC 473..1319 9..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:07 Download gff for MXO01046.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11998906..11998996 765..855 98 <- Minus
3L 12000273..12000690 347..764 100 <- Minus
3L 12000750..12001093 1..346 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:17 Download gff for MXO01046.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11992006..11992096 765..855 98 <- Minus
arm_3L 11993373..11993790 347..764 100 <- Minus
arm_3L 11993850..11994193 1..346 99   Minus