MXO01048.5prime Sequence
902 bp (834 high quality bases) assembled on 2006-12-21
> MXO01048.5prime
CAGTCGACATGACGATGAGTACAAACAACTGCGAGAGCATGACCTCGTAC
TTCACCAACTCGTACATGGGGGCGGACATGCATCATGGGCACTACCCGGG
CAACGGGGTCACCGACCTGGACGCCCAGCAGATGCACCACTACAGCCAGA
ACGCGAATCACCAGGGCAACATGCCCTACCCGCGCTTTCCACCCTACGAC
CGCATGCCCTACTACAACGGCCAGGGGATGGACCAGCAGCAGCAGCACCA
GGTCTACTCCCGCCCGGACAGCCCCTCCAGCCAGGTGGGCGGGGTCATGC
CCCAGGCGCAGACCAACGGTCAGTTGGGTGTTCCCCAGCAGCAACAGCAG
CAGCAGCAACAGCCCTCGCAGAACCAGCAGCAACAGCAGGCGCAGCAGGC
CCCACAGCAACTGCAGCAGCAGCTGCCGCAGGTGACGCAACAGGTGACAC
ATCCGCAGCAGCAACAACAGCAGCCCGTCGTCTACGCCAGCTGCAAGTTG
CAAGCGGCCGTTGGTGGACTGGGTATGGTTCCCGAGGGCGGATCGCCTCC
GCTGGTGGATCAAATGTCCGGTCACCACATGAACGCCCAGATGACGCTGC
CCCATCACATGGGACATCCGCAGGCGCAGTTGGGCTATACGGACGTTGGA
GTTCCCGACGTGACAGAGGTCCATCAGAACCATCACAACATGGGCATGTA
CCAGCAGCAGTCGGGAGTTCCGCCGGTGGGTGCCCCACCTCAGGGCATGA
TGCACCAGGGCCAGGGTCCTCCACAGATGCACCAGGGACATCCTGGCCAA
CACACGCCTCCTTCCCAAAACCCGAACTCGCAGTCCTCGGGGATGCCGTC
TCCACTGTATCCCTGGATGCGAAGTCAGTTTGGTAAGTGTCAAGGAAAGC
AA
MXO01048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1028-PH | 894 | Antp-RH | 1..891 | 9..899 | 4455 | 100 | Plus |
CG1028-PL | 1137 | Antp-RL | 1..886 | 9..894 | 4430 | 100 | Plus |
CG1028-PI | 1137 | Antp-RI | 1..886 | 9..894 | 4430 | 100 | Plus |
CG1028-PJ | 1137 | Antp-RJ | 1..886 | 9..894 | 4430 | 100 | Plus |
CG1028-PM | 1137 | Antp-RM | 1..886 | 9..894 | 4430 | 100 | Plus |
CG1028-PD | 1125 | Antp-RD | 1..874 | 9..882 | 4370 | 100 | Plus |
CG1028-PN | 1125 | Antp-RN | 1..874 | 9..882 | 4370 | 100 | Plus |
CG1028-PF | 1098 | Antp-RF | 1..621 | 9..629 | 3105 | 100 | Plus |
CG1028-PE | 1098 | Antp-RE | 1..621 | 9..629 | 3105 | 100 | Plus |
CG1028-PK | 1086 | Antp-RK | 1..621 | 9..629 | 3105 | 100 | Plus |
CG1028-PG | 1086 | Antp-RG | 1..621 | 9..629 | 3105 | 100 | Plus |
CG1028-PF | 1098 | Antp-RF | 620..847 | 667..894 | 1140 | 100 | Plus |
CG1028-PE | 1098 | Antp-RE | 620..847 | 667..894 | 1140 | 100 | Plus |
CG1028-PK | 1086 | Antp-RK | 620..835 | 667..882 | 1080 | 100 | Plus |
CG1028-PG | 1086 | Antp-RG | 620..835 | 667..882 | 1080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Antp-RH | 4111 | CG1028-RH | 1731..2621 | 9..899 | 4455 | 100 | Plus |
Antp-RJ | 3490 | CG1028-RJ | 1731..2616 | 9..894 | 4430 | 100 | Plus |
Antp-RI | 3279 | CG1028-RI | 1520..2405 | 9..894 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6909290..6909910 | 629..9 | 3105 | 100 | Minus |
3R | 32079331 | 3R | 6908508..6908740 | 899..667 | 1165 | 100 | Minus |
3R | 32079331 | 3R | 6908871..6908915 | 670..626 | 225 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:53:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6851 | 335..474 | 337 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6900 | 336..472 | 316 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6923 | 336..471 | 275 | 71.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2497 | 336..495 | 266 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2536 | 336..475 | 259 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7004 | 212..474 | 251 | 60.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2415 | 369..474 | 242 | 69.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6859 | 358..496 | 238 | 64.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2406 | 375..474 | 203 | 67 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2726..2890 | 333..498 | 196 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2517..2655 | 336..474 | 191 | 61.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1154 | 373..471 | 191 | 67.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2403 | 380..474 | 186 | 67.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6803 | 373..474 | 174 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2826 | 18..474 | 168 | 54.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1060..1133 | 401..474 | 163 | 68.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6804 | 356..495 | 161 | 59 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8755..8922 | 334..497 | 154 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2657 | 232..496 | 145 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2376 | 405..474 | 134 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1470..1578 | 369..474 | 123 | 60.9 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 891..1011 | 349..474 | 120 | 60.3 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3192..3346 | 349..509 | 115 | 56.2 | Plus |
MXO01048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:20 Download gff for
MXO01048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Antp-PH | 1..891 | 9..900 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:45 Download gff for
MXO01048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1028-PH | 1..891 | 9..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:03 Download gff for
MXO01048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1028-RH | 1723..2621 | 1..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:55 Download gff for
MXO01048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Antp-RH | 1723..2621 | 1..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:26 Download gff for
MXO01048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Antp-RH | 1723..2621 | 1..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:26 Download gff for
MXO01048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6908507..6908738 | 669..900 | 99 | <- | Minus |
3R | 6908873..6908911 | 630..668 | 100 | <- | Minus |
3R | 6909290..6909914 | 1..629 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:55 Download gff for
MXO01048.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2734229..2734460 | 669..900 | 99 | <- | Minus |
arm_3R | 2734595..2734633 | 630..668 | 100 | <- | Minus |
arm_3R | 2735012..2735636 | 1..629 | 99 | | Minus |