MXO01049.5prime Sequence
909 bp (838 high quality bases) assembled on 2006-12-21
> MXO01049.5prime
CAGTCGACATGTCGACGATTAACCTGCATCCCCCGCAAACCTACTCGCGA
CTTTTCCGACCCTGGGATACTCAGCGCCAGGCGGCGACCTCGGCGGCACC
CAGGACAGTGAAGCAGGAGCCGGAGGCGATTACCATCAAGACGGAGCTGG
CCAGCAGCAGTTTCGGCCACGACTGCGACGGAGACTTCTCCTCCGCATCC
TCCTCTGCGTCAAGCAGCAGCAACAGCAGCAAGTCCTGCTACGAGGAGGC
CCTGAACCACAGCAGCTACACCCGCACTTCCACCCCGCTGCTGGACGCCG
CCCCGCACCCCGTCTTTTCACACCCGCAGTCGTCGCCGTTGGACACGCAC
GCCGCCGCCACCGCATCCTTGGCTCCGCCAAACCAGCACGCTCCATTCCT
GTCGGCCGCCAGCGATCTCTACTACGCTGCCGCCGCCGCAGCAGCCGCTG
CTGCCTCCACGCCCACTGCCGTCCCGGGCTTCGGCATGGACCCGTTCACT
ATGGGCCTGATGGAGCAAGAGTACGCCCGCGTGATGGCCGAGGACGCACA
GTTAAAGGCGCTCAACAGCCGCAAGCAGCGGCCGAAGAAGTTCAAGTGCC
CCAACTGCGACGTGGCCTTCTCCAACAACGGCCAGCTGAAGGGCCACATC
CGCATCCACACCGGCGAACGCCCATTTAAGTGCGACGTGAACACATGCGG
CAAGACCTTCACCCGCAATGAGGAACTGACGCGTCACAAGCGAATCCACA
CCGGACTGCGGCCGTATCCTTGCAGTGCCTGCGGAAAGAAGTTTGGCCGA
CGCGACCACTTAAAGAAGCACATGAAGACGCACATGCCGCAGGAGCGCCA
GCTGGGCCCGTCCATCTTCGTGCCCATGTACTCATACCTTTATGGCTACG
CAAGCTTTC
MXO01049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9768-PA | 894 | hkb-RA | 1..891 | 9..899 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hkb-RA | 1567 | CG9768-RA | 144..1034 | 9..899 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4345848..4346503 | 664..9 | 3280 | 100 | Minus |
| 3R | 32079331 | 3R | 4345548..4345784 | 899..663 | 1185 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6862 | 152..277 | 169 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2529 | 66..284 | 131 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2448 | 193..284 | 115 | 59.8 | Plus |
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 1935..2020 | 778..864 | 108 | 59.8 | Plus |
MXO01049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:22 Download gff for
MXO01049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hkb-PA | 1..894 | 9..902 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:45 Download gff for
MXO01049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9768-PA | 1..894 | 9..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:05 Download gff for
MXO01049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9768-RA | 141..1038 | 1..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:20 Download gff for
MXO01049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hkb-RA | 137..1034 | 1..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:08 Download gff for
MXO01049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hkb-RA | 137..1034 | 1..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:08 Download gff for
MXO01049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4345548..4345783 | 664..899 | 100 | <- | Minus |
| 3R | 4345849..4346510 | 1..663 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:20 Download gff for
MXO01049.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 171270..171505 | 664..899 | 100 | <- | Minus |
| arm_3R | 171571..172232 | 1..663 | 99 | | Minus |
