MXO01050.5prime Sequence
886 bp (799 high quality bases) assembled on 2006-12-21
> MXO01050.5prime
CAGTCGACATGATGCATATCAAAAGCCTGCCCCATGCCCATGCCGCTGCT
ACGGCGATGAGCAGTAACTGCGACATTGTCATAGTGGCCGCCCAGCCCCA
AACCACCATAGCAAACAATAATAACAATGAGACGGTCACCCAGGCCACGC
ATCCGGCTCACATGGCGGCGGTTCAACAGCAGCAGCAACAACAACAGCAA
CAGCAGCAGCAACATCATCAGCAGCAGCAACAGCAGTCGAGCGGACCACC
CTCTGTGCCGCCGCCACCCACGGAACTCCCCTTGCCCTTCCAGATGCACT
TAAGCGGGATCTCGGCGGAGGCGCATAGTGCCGCCCAAGCAGCGGCTATG
GCAGCTGCCCAAGCTGCAGCAGCCCAAGCTGCTGCGGCGGAACAACAGCA
ACCGCCGCCACCAACTTCACATCTGACGCACCTGACCACGCATAGTCCGA
CAACGATCCACAGTGAGCATTACCTGGCCAATGGACATAGCGAGCATCCC
GGAGAGGGCAACGCTGCCGTTGGCGTAGGGGGAGCTGTCCGCGAGCCGGA
GAAACCTTTCCACTGCACCGTCTGCGATCGTCGCTTTCGACAGCTAAGCA
CACTGACCAACCATGTAAAGATCCATACTGGCGAGAAGCCCTACAAATGC
AACGTTTGTGATAAGACCTTCCGTCAATCGTCGACGCTGACGAACCATCT
GAAGATCCATACGGGCGAGAAGCCTTATAACTGCAACTTTTGTCCCAAGC
ATTTTCGACAACTGAGCACGCTGGCCAACCATGTGAAGATCCACACGGGT
GAAAAGCCTTTTGAGTGTGTCATCTGCAAGAAGCAGTTCCGACAGTCCAG
CACGCTCAACAACCACATAAAAATACACGTCATGGA
MXO01050.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5683-PA | 927 | Aef1-RA | 1..878 | 9..886 | 4390 | 100 | Plus |
| CG5683-PC | 927 | Aef1-RC | 1..878 | 9..886 | 4390 | 100 | Plus |
| CG5683-PB | 927 | Aef1-RB | 1..878 | 9..886 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aef1-RD | 2684 | CG5683-RD | 475..1353 | 8..886 | 4395 | 100 | Plus |
| Aef1-RB | 2579 | CG5683-RB | 370..1248 | 8..886 | 4395 | 100 | Plus |
| Aef1-RC | 2622 | CG5683-RC | 413..1291 | 8..886 | 4395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21435219..21436013 | 8..802 | 3975 | 100 | Plus |
| 3L | 28110227 | 3L | 21436072..21436160 | 798..886 | 445 | 100 | Plus |
| 3L | 28110227 | 3L | 21435814..21435937 | 687..810 | 215 | 78.2 | Plus |
| 3L | 28110227 | 3L | 21435898..21436014 | 603..719 | 195 | 77.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:13:01 has no hits.
MXO01050.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:24 Download gff for
MXO01050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aef1-PB | 1..877 | 9..885 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:45 Download gff for
MXO01050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5683-PB | 1..877 | 9..885 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:07 Download gff for
MXO01050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5683-RB | 354..1236 | 1..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:59 Download gff for
MXO01050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aef1-RC | 408..1290 | 1..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:31 Download gff for
MXO01050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aef1-RC | 408..1290 | 1..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:31 Download gff for
MXO01050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21435214..21436009 | 1..798 | 99 | -> | Plus |
| 3L | 21436073..21436159 | 799..885 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:59 Download gff for
MXO01050.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21428314..21429109 | 1..798 | 99 | -> | Plus |
| arm_3L | 21429173..21429259 | 799..885 | 100 | | Plus |
