MXO01051.5prime Sequence
901 bp (809 high quality bases) assembled on 2006-12-21
> MXO01051.5prime
CAGTCGACATGAGCGTGGAGGAGGAAGTGTTTCGAATCCAAAAGAAGATG
AGCAAGATGGCCAGCGACGGCACAGGACAGGATCAGGCTCTGGACCTGCT
GAAGGCCCTGCAAACGCTTAACATCAATCTCGACATTCTGACCAAAACGC
GCATCGGCATGACCGTAAACGAGCTGCGCAAGAGTAGCAAGGACGACGAG
GTGATCGCTCTGGCCAAGACGCTGATCAAGAACTGGAAACGATTCCTCGC
CAGCCCGGCGCCAACCACACCGAACAACAGCTCCGCTAAGGAGGGCTCCT
CCAACAACAGCAGTGCCTCGAAGTCCACCAGTGCCGCCAAGTCGTCGTCG
TCAATCTCCGGCAAGGATAAGTCCAGTTCATCCAGCTCATCCAAGGATAA
AGAGAAGAAAGGCTCGACATCCTCGTCACAGACCTCGTTTCCCTCCGGCG
GCATGACAGATGCGGTCCGCATCAAATGCCGCGAAATGCTGGCCACCGCA
CTGAAGATTGGTGAAGTGCCCGAAGGATGCGGTGAGCCGGAGGAAATGGC
CGCCGAACTGGAGGATGCCATTTACTCCGAGTTCAATAACACGGATATGA
AGTACAAGAATCGCATTAGGTCACGCGTGGCCAATCTGAAGGACCCCAAA
AATCCTGGATTGCGAGGCAACTTTATGTGCGGCGCCGTCACTGCCAAGCA
GCTGGCCAAAATGACGCCGGAGGAGATGGCCAGCGATGAGATGAAGAAGC
TGCGCGAGAAGTTCGTCAAGGAGGCCATCAACGATGCCCAGCTGGCCACC
GTGCAGGGCACCAAGACCGATCTCCTCAAGTGCGCCAAGTGCAAGAAGCG
CAACTGCACCTACAACCAGCTGCAGACTCGTTCCGCCGATGAACCTATGA
C
MXO01051.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3710-PA | 942 | TfIIS-RA | 1..893 | 9..901 | 4465 | 100 | Plus |
| CG8117-PA | 489 | CG8117-RA | 259..310 | 711..762 | 135 | 90.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIS-RB | 1773 | CG3710-RB | 260..1152 | 9..901 | 4465 | 100 | Plus |
| TfIIS-RA | 1401 | CG3710-RA | 260..1152 | 9..901 | 4465 | 100 | Plus |
| CG8117-RA | 770 | CG8117-RA | 323..439 | 706..822 | 270 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15059540..15060366 | 901..75 | 4135 | 100 | Minus |
| 2L | 23513712 | 2L | 15060432..15060498 | 75..9 | 335 | 100 | Minus |
| X | 23542271 | X | 15644544..15644660 | 706..822 | 270 | 82.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:30 has no hits.
MXO01051.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:26 Download gff for
MXO01051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIS-PA | 1..893 | 9..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:46 Download gff for
MXO01051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3710-PA | 1..893 | 9..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:09 Download gff for
MXO01051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3710-RA | 256..1148 | 9..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:17 Download gff for
MXO01051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIS-RA | 260..1152 | 9..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:52 Download gff for
MXO01051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIS-RA | 260..1152 | 9..901 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:52 Download gff for
MXO01051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15059540..15060366 | 75..901 | 100 | <- | Minus |
| 2L | 15060433..15060498 | 9..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:17 Download gff for
MXO01051.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15059540..15060366 | 75..901 | 100 | <- | Minus |
| arm_2L | 15060433..15060498 | 9..74 | 100 | | Minus |
