MXO01052.5prime Sequence
876 bp (825 high quality bases) assembled on 2006-12-21
> MXO01052.5prime
CAGTCGACATGATGACTATGGACATTACCAAAACCGAACCCGGTCTCGTC
GGGCTTTCCTCCAACCAACAGCAGCAGCAGCAGCAGCAGTCGCAGCAAAG
CAACGCCGGCATGAACAGCGGTGGCCAGAACAACGGGCCCAATCCCAATG
GCAATGGGAACGTGGTCAATGTGGTCAACTCCGGCGGTGCCGGTGGCGGC
AACAATGGCAACGGGAATGTCCAGAGCATCGCCGCCGCTGCCAACAATAA
TAACAATAACAACAACAACGGCAGCCAATTGTGCGCCGGCTGCGGCAAGC
ACATCCAGGACCGCTATCTCCTCCGCGCCCTGGACATGCTGTGGCACGAG
GACTGCCTCAAGTGCGGCTGCTGCGACTGCCGCCTGGGCGAGGTGGGCTC
CACGCTCTACACCAAGGGCAACCTGATGCTCTGCAAGCGGGACTACTTGA
GATTGTTTGGCAACACGGGCTACTGCGCCGCCTGCAGCAAGGTGATCCCA
GCCTTCGAGATGGTGATGCGTGCAAGGACCAATGTCTATCACTTGGAGTG
CTTCGCTTGTCAGCAGTGTAACCACAGATTCTGTGTGGGCGACCGTTTCT
ACCTGTGCGAGAACAAGATACTCTGCGAGTACGACTACGAGGAGCGCCTG
GTCTTCGCATCGATGGCCAATCATCCGATGCTCAAGCGACACGTCTCCTC
CTTGGGCCAGGGCTCACCGACGGGAGCGGCCGGGGCGCAGAATACAGCTG
GTGGATTGCTGGGCGGCGGACCCGGTGGCGGCAATGTGAATGGCGTGGGC
ATGGTCAACGGACCGCGCACCCCTGGCGATCACAATAACAACAACAATGG
CCCACAGACACCGACCGGCGGTGGCT
MXO01052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6500-PA | 942 | Bx-RA | 1..868 | 9..876 | 4265 | 99.6 | Plus |
| CG6500-PB | 1155 | Bx-RB | 214..1081 | 9..876 | 4265 | 99.6 | Plus |
| CG6500-PC | 942 | Bx-RC | 1..868 | 9..876 | 4265 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bx-RD | 2494 | CG44425-RD | 763..1630 | 9..876 | 4295 | 99.7 | Plus |
| Bx-RC | 3413 | CG44425-RC | 599..1466 | 9..876 | 4295 | 99.7 | Plus |
| Bx-RB | 2051 | CG44425-RB | 320..1187 | 9..876 | 4295 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18566696..18567138 | 9..451 | 2215 | 100 | Plus |
| X | 23542271 | X | 18570561..18570862 | 575..876 | 1465 | 99 | Plus |
| X | 23542271 | X | 18567509..18567636 | 450..577 | 640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 207..278 | 125 | 67.1 | Plus |
| Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3132..3208 | 192..271 | 122 | 65 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 238..274 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 176..269 | 112 | 59.6 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2649..2684 | 242..277 | 108 | 77.8 | Plus |
MXO01052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-21 20:24:27 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:46 Download gff for
MXO01052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6500-PC | 1..868 | 9..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:11 Download gff for
MXO01052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6500-RC | 592..1464 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:37 Download gff for
MXO01052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RB | 320..1187 | 9..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:08 Download gff for
MXO01052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RB | 320..1187 | 9..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:08 Download gff for
MXO01052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18566696..18567138 | 9..451 | 100 | -> | Plus |
| X | 18567511..18567636 | 452..577 | 100 | -> | Plus |
| X | 18570564..18570862 | 578..876 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:37 Download gff for
MXO01052.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18460729..18461171 | 9..451 | 100 | -> | Plus |
| arm_X | 18461544..18461669 | 452..577 | 100 | -> | Plus |
| arm_X | 18464597..18464895 | 578..876 | 98 | | Plus |
