MXO01053.5prime Sequence
776 bp (615 high quality bases) assembled on 2006-12-21
> MXO01053.5prime
CAGTCGACATGCATACCAACGTGGATAGCAGGGACCTTAAGTGTCGCATC
TGCTTGGTGCAGCCTAAGGATGAGTCTCTCATGCCCACGGAGCCCGATTT
TCCAGATAAAATCAAACGCTGCACAGGAGTTGAATTGAGTGAGAGTCCCG
ACTGGCCCAATCGCATCTGCACCAGCTGCGCCCTGCTGCTCAGAGCTGCC
CTCAAACTCAGATCCCTTTGCCAGCAGACGGAGAAGGATCTGAAGGAGCA
GAAGCTGCAGGAGATAAACATAGAGATTGTTCACGATGAGCAGGAGACGA
AGAAGAAAACTGAATCAAGAGACCTGTCCAAGAATGAGGCTACCGGTAGC
GACAGCGAGTTGGAGTACGAGTACCTAGACTCATACGATGTAACGCTGGA
GAGCAGCGAGGATGTGGCCTGTAGTGCCGATGAATTGGTCAGCATAGAGC
CTGCCATCTCCGCTCCAGAGGAATCTGTCTATTCACTTAGTCCCAAACCG
GTAACTTTTGAAGACGAGGACTCCGGACAGGCTGCTTCCTTTACCTGCAA
CATTTGCAACAATGTCTACTCAGAGCGCGTAAAGTTGACCAACCACATGA
AAGTCCACAGCGCGAAGAAACCACACGAATGCGAAATCTGTCACAAACGT
TTTCGCCAGACTCCGCAGTTGGCGAGGCACATGAACACCCACACCGGTAA
TCGTCCCTACAAATGTGACTATTGCGACTCCAGGTTCGCCGATCCCTCCA
CTCGCATTAAGCATCAGAGGATCCAC
MXO01053.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4854-PA | 960 | CG4854-RA | 1..768 | 9..776 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4854-RA | 1220 | CG4854-RA | 98..865 | 9..776 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20028339..20028838 | 135..634 | 2500 | 100 | Plus |
| 3R | 32079331 | 3R | 20028904..20029039 | 635..770 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 20028155..20028280 | 9..134 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:44:28 has no hits.
MXO01053.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:29 Download gff for
MXO01053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4854-PA | 1..768 | 9..776 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:46 Download gff for
MXO01053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4854-PA | 1..768 | 9..776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:13 Download gff for
MXO01053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4854-RA | 93..867 | 1..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:34 Download gff for
MXO01053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4854-RA | 93..867 | 1..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:53 Download gff for
MXO01053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4854-RA | 91..865 | 1..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:53 Download gff for
MXO01053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20028148..20028280 | 1..134 | 97 | -> | Plus |
| 3R | 20028339..20028838 | 135..634 | 100 | -> | Plus |
| 3R | 20028904..20029041 | 635..776 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:34 Download gff for
MXO01053.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15853870..15854002 | 1..134 | 97 | -> | Plus |
| arm_3R | 15854061..15854560 | 135..634 | 100 | -> | Plus |
| arm_3R | 15854626..15854763 | 635..776 | 97 | | Plus |
