Clone MXO01054 Report

Search the DGRC for MXO01054

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:54
Vector:pMK33-CTAP-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01054.5prime Sequence

854 bp (786 high quality bases) assembled on 2006-12-21

> MXO01054.5prime
CAGTCGACATGGATTCTGTGACAAGTGAACAGAGTGAAAATAACAACAAT
AAAGCGGGCGCAATAAATAACAATATTAATAGTGGTATTGAAAGAGCCGC
GGGCAATATGAACACCACCGCCATGTTGATGCATCACCAGCAGCAGCAGC
AGGCAGCCGCAGCAGCGGCAGCCGCAGCAGCCCAGCAGCAACAGCAGCAG
CACAATGGACGCGACGGTAGCAACAGTTCGCGTGGAGCCAACGAGGATCG
TCCAAATGGACGGAGCTCGCACACAGGACGAGGATCCAGTTGCTCACCGG
CCAGTTCACCAAGTCGCCATCCCAGTGCCGTCAGTCCGGTGAGCTCCCTC
AACCACTCCATGATGCAGCAGATGCAGCAACAGCAGCAACAACAGCAGCA
GCAACAGCAGCAGCAGCAACACCATCAGCTCAGCCCCCCGCCACATGGAA
TGCCATCGGGCAACGGACTGCCGACGGGCCTACCGCCCAGAATGCCCCAT
GGACTGCCGCCCCATTCGCTGGGGCTCCTCAACTCCCTGCAGATGATGCA
CCATGCCTCCCCCTTGGAACTGATGGCCGCCGCCCATCACCATGTGCCTC
CAAGGTCGTACAACTCACCGCCGCCGATCTCCACCTCGGATCCCAGTGCC
AATGAGTGCAAGCTGGTGGAGTACCGGGGTCAGAAGGTCGCCGCATTCAT
AATTAGCAACGAAACGATGCTCTGCCTGCCGCAGGCCTTCGAGCTCTTCC
TGAAGCACTTGGTCGGCGGTCTGCATACGGTTTATACCAAACTAAAGCGC
CTTGACATCGTACCGCTCGTCTGCAATGTGGAACAGGTGCGCATATTACG
CGGC

MXO01054.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4952-PE 3246 dac-RE 1..846 9..854 4205 99.8 Plus
CG4952-PD 3225 dac-RD 1..846 9..854 4205 99.8 Plus
CG4952-PA 3219 dac-RA 1..846 9..854 4205 99.8 Plus
CG4952-PB 3246 dac-RB 1..846 9..854 4205 99.8 Plus
CG4952-PF 3219 dac-RF 1..846 9..854 4205 99.8 Plus
CG4952-PG 3192 dac-RG 1..846 9..854 4205 99.8 Plus
CG4952-PC 3198 dac-RC 1..846 9..854 4205 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
dac-RC 4934 CG4952-RC 628..1473 9..854 4215 99.9 Plus
dac-RG 4928 CG4952-RG 628..1473 9..854 4215 99.9 Plus
dac-RF 4955 CG4952-RF 628..1473 9..854 4215 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16483897..16484742 854..9 4215 99.9 Minus
Blast to na_te.dros performed on 2014-11-28 19:59:44 has no hits.

MXO01054.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:31 Download gff for MXO01054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4952-PA 1..846 9..854 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:48 Download gff for MXO01054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4952-PC 1..846 9..854 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:15 Download gff for MXO01054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4952-RA 611..1459 2..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:01 Download gff for MXO01054.5prime
Subject Subject Range Query Range Percent Splice Strand
dac-RF 625..1473 2..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:33 Download gff for MXO01054.5prime
Subject Subject Range Query Range Percent Splice Strand
dac-RF 625..1473 2..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:33 Download gff for MXO01054.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16483897..16484745 2..854 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:01 Download gff for MXO01054.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16483897..16484745 2..854 99   Minus