MXO01055.5prime Sequence
915 bp (823 high quality bases) assembled on 2006-12-21
> MXO01055.5prime
CAGTCGACATGGTGAAAAGTGAAATGGAATTCAAGAGCAACTTCTCCATC
GATGCCATCTTGGCCAAGAAACCCATCAACACCGCAACTCAACCCATCAA
AACCGAACCGGTGCATCATCATCATCAGTACGTTCATCCGTACTCCAATT
CCGATGGCGAACTCTCGGCTTCGGAGGATTTCGACAGCCCCAGCAGGACC
AGCACACCCATGAGCAGTGCCGCCGAGAGTCTATCGTCGCAAAACAATGA
CAAGCTCGACGTGGAGTTCGACGATGAGCTGGAGGATCAGCTGGACGAGG
ACCAGGAGAGCGAGGATGGCAATCCCAGCAAGAAACAGAAAATGACCGCC
GGCAGCGATACCAAGAAACCGCCATACAGCTACAACGCCCTCATCATGAT
GGCCATCCAGGATAGTCCCGAGCAGCGGTTGACTTTGAATGGCATCTATC
AGTATCTGATCAATAGATTCCCCTACTTCAAGGCCAACAAGCGGGGCTGG
CAGAACTCCATTCGCCACAATCTGAGCCTGAACAAGTGCTTCACGAAGAT
TCCCCGCAGCTACGATGATCCCGGCAAGGGCAACTACTGGATCCTGGACC
CCTCGGCCGAGGAGGTATTCATTGGCGAGACCACCGGCAAGCTGAGGCGC
AAGAATCCCGGCGCCAGTCGCACTCGCCTGGCCGCCTATCGTCAGGCCAT
ATTCTCGCCGATGATGGCTGCTTCACCATACGGAGCTCCAGCTTCCAGCT
ACGGATACCCGGCTGTTCCATTCGCCGCCGCTGCCGCCGCCGCCCTGTAC
CAGCGCATGAATCCCGCTGCCTATCAGGCTGCCTATCAGCAGATGCAGTA
CCAGCAGGCTCCTCAGGCCCACCATCATCAGGCGCCCCATCCCGCCCAGA
TGCAGGGCTATCCAC
MXO01055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16738-PA | 969 | slp1-RA | 1..907 | 9..915 | 4535 | 100 | Plus |
| CG1132-PA | 1098 | fd64A-RA | 391..429 | 486..524 | 170 | 97.4 | Plus |
| CG5069-PA | 1527 | croc-RA | 327..384 | 485..542 | 165 | 91.3 | Plus |
| CG2939-PA | 1356 | slp2-RA | 736..799 | 564..627 | 145 | 89 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slp1-RA | 1425 | CG16738-RA | 110..1016 | 9..915 | 4535 | 100 | Plus |
| slp2-RA | 2346 | CG2939-RA | 905..1217 | 375..687 | 385 | 76.8 | Plus |
| croc-RA | 2347 | CG5069-RA | 563..725 | 436..598 | 245 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3825784..3826690 | 9..915 | 4535 | 100 | Plus |
| 2L | 23513712 | 2L | 3837744..3838016 | 375..647 | 375 | 75.8 | Plus |
| 3L | 28110227 | 3L | 21475755..21475917 | 598..436 | 245 | 76.7 | Minus |
| 3L | 28110227 | 3L | 4020394..4020483 | 464..553 | 240 | 84.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:58:34 has no hits.
MXO01055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:32 Download gff for
MXO01055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp1-PA | 1..907 | 9..915 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:48 Download gff for
MXO01055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16738-PA | 1..907 | 9..915 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:17 Download gff for
MXO01055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16738-RA | 98..1011 | 1..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:22 Download gff for
MXO01055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp1-RA | 103..1016 | 1..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:10 Download gff for
MXO01055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slp1-RA | 103..1016 | 1..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:10 Download gff for
MXO01055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3825777..3826690 | 1..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:22 Download gff for
MXO01055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3825777..3826690 | 1..915 | 99 | | Plus |
