MXO01056.5prime Sequence
886 bp (847 high quality bases) assembled on 2006-12-21
> MXO01056.5prime
CAGTCGACATGGACCTGCGTAAACTGTGCCGCATTTGCTTCGTGGACAGC
GCTTCGGTGGATATACGGGAGCACAGGAGCGGTGGCAGTTCGGATCAGAC
AGTCCTCCAGCTGATAGAAGCCATGTTCGGCTGGAACATAGCACTTAATC
TTACTGAGGAGCTGCCCATGATCTGTAATGATTGCTTGGAAGATTGCCTG
CAGCAGTACGCCTTCTTCAGGAAGCTAACGTTCGCCAATCAGCAGCTACT
GCAGCTCTACAACGAGGCGGAGGTAGAAATGTGCCAAGTTAAGATGGACG
CAACGGAGGAAGAGCCCGAAAACCAGGCTAGTGATGAATTCGAGATACTG
GAGGAATTCAGGAGGATACCACTGGATTATGTGGTTTTAGACCCCGATCG
TCCTACAGAAACAAGACAAACGAGGAGAAGGACGGATAGCTGTACGAAAC
CCTCTCAAAGGCTGGCCAACCAAGATTCGCTGATTGTCTCCGAGTTTTTA
CCTGCCACCACAGCCCAACCACGACTGGATCTATCCGACTCTCAGCTGGA
GCAACTGGAATCCCCAGCATACGAGATGCGCACCGTGGACTATGCTGCCG
TCGAACTGAAACACTACAACCTGGACGAGTACAACGAGGCCAATCGCCTG
CTGGACGTGGAGCCCAGTGGCAGCCAGGCCATCTACAAGTGCCAGTACTG
CCCACTGGCTTATGCCTCGCCTCAATATCTGAAAACCCACGTGCGCAATT
CGCACGTCTGCAAGTACTGCACCACCGCCTTCGCCAAGGTTCGCGATCTC
AATGAGCATATTCGGCAGAAGCATCCGCATCACCAGTGCGTTGTCTGCTC
CNACAACTTTAGTACCAGTAGCAATCTGAGGGCTCA
MXO01056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13123-PA | 972 | CG13123-RA | 1..878 | 9..886 | 4371 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13123-RA | 1094 | CG13123-RA | 101..979 | 8..886 | 4384 | 99.9 | Plus |
| CG13123-RC | 1087 | CG13123-RC | 101..972 | 8..886 | 4269 | 99.1 | Plus |
| CG13123-RB | 996 | CG13123-RB | 45..881 | 50..886 | 4174 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9792076..9792828 | 886..134 | 3754 | 99.9 | Minus |
| 2L | 23513712 | 2L | 9792881..9793007 | 134..8 | 635 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:24:23 has no hits.
MXO01056.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:34 Download gff for
MXO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13123-PA | 1..877 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:48 Download gff for
MXO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13123-PA | 1..877 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:19 Download gff for
MXO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13123-RA | 91..968 | 8..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:01 Download gff for
MXO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13123-RA | 101..978 | 8..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:52 Download gff for
MXO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13123-RA | 101..978 | 8..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:52 Download gff for
MXO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9792077..9792827 | 135..885 | 99 | <- | Minus |
| 2L | 9792881..9793007 | 8..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:01 Download gff for
MXO01056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9792077..9792827 | 135..885 | 99 | <- | Minus |
| arm_2L | 9792881..9793007 | 8..134 | 100 | | Minus |
