MXO01057.5prime Sequence
891 bp (788 high quality bases) assembled on 2006-12-21
> MXO01057.5prime
CAGTCGACATGACTGAAGTACAATATAAAGAGGCCGAGATCTTGGCTCTA
CTACCACATACATATGAGGATGAGGAGCTGTCCTTAAACACAGAAGAGCT
ACAGTTCGAGGAACTCAATGAGAGAAGCCAGCACCAGCAAGGCGGATCTC
CGTCCTTCGTCTGCAGACGCTGTCCAGCGCTATTCCTCACCAGGGAGGAG
TTGGCCGCCCATCGGCCCACACACCGATACCAGGGTGGACAGCAAACGCC
CGCGTCGGAGCATGCCTGCGACGCGTGTGGAAGGGTCTTCCAAAAGCACA
ACGCCCTTGTGGATCACATGAATGCCCACAACGACGTGCGGAACTATCCG
TGTCCCGAGTGTCCGGCGCGCTTTGTGCAGCGCAGCAATAGGGAGTGTCA
CCTGAAGAACGTTCATCGGAAGGTGTACCTGCACTCCTGTCCAGAACCGG
GCTGCAAGAAGCGTTTCCAGCAGAGGCGGGAGTGTGATCAGCATGTGAAG
ACGGTCCACCAGAATGAGCGGAACCTCGTTTGCGACACCTGCAGTGCCCG
CTTCAGCCATCCTGTAAATTATAGAAAGCACTTGGCGTCCCATGGCTCCG
CGAAGAGCTACGGCTGTCCGATCTGTGGAAAGCTCTTCGGACGGCCCGAA
AACAGGGATGTTCATCTCTTCGTCCATAGTATCTGTAAGGCCTATATATG
CTCCGTCTGCGGAGCAGATTATATGCGGCGCAATCAGTTGATACGCCATG
GCTTGGCCAGTGGCCACCACAACGATCCGATTGTCCGCCAAAAACCGCAG
TTTAGTCCGGCCCTTGCTGCGAAGAATCGAAGCCAGAGAAGCGCAATAGA
CGAGTCCCAGGACGAGGAGCTCCNATGGCTGAAAGGAGTTG
MXO01057.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11398-PA | 990 | CG11398-RA | 1..883 | 9..891 | 4396 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11398-RD | 3018 | CG11398-RD | 79..961 | 9..891 | 4404 | 99.9 | Plus |
| CG11398-RA | 1487 | CG11398-RA | 79..961 | 9..891 | 4404 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1214046..1214793 | 891..144 | 3729 | 99.9 | Minus |
| X | 23542271 | X | 1214942..1215078 | 145..9 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:04 has no hits.
MXO01057.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:36 Download gff for
MXO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-PA | 1..883 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:49 Download gff for
MXO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-PA | 1..883 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:21 Download gff for
MXO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-RA | 49..936 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:57 Download gff for
MXO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-RA | 74..961 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:31 Download gff for
MXO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11398-RA | 74..961 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:31 Download gff for
MXO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1214046..1214792 | 145..891 | 99 | <- | Minus |
| X | 1214943..1215083 | 1..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:57 Download gff for
MXO01057.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1108079..1108825 | 145..891 | 99 | <- | Minus |
| arm_X | 1108976..1109116 | 1..144 | 97 | | Minus |
