MXO01058.5prime Sequence
878 bp (831 high quality bases) assembled on 2006-12-21
> MXO01058.5prime
CAGTCGACATGTCGCTGGGTGCCATGCATTGTACGCGATGTGCCGACGGC
TTCGAGCCGACTGAGAAGATTGTTAACTCCAATGGAGAACTCTGGCACAC
CCAGTGCTTCGTATGTGCCCAGTGCTTCCGACCCTTCCAGGATGGGATAT
TCTACGAGTTCGAGGGCCGTAAGTACTGTGAACGCGACTTTCACGTGCTC
TTCGCTCCCTGCTGCAACAAGTGCGGCGAGTTCGTCATCGGACGGGTCAT
CAAGGCCATGTCAGCTAGCTGGCATCCACAGTGCTTCCGCTGCCAATTGT
GCGCCAAGGAGCTGGCTGATTGCGGATTCATCAAGAACCAGAACCGCGCC
TTGTGTCACGAGTGCAATGCCAAGGTGAAGGCGGAGATTACCGGCCGCTA
TGTATGCCAAAAATGCCACGGCCTCATCGACGAGGAGCCTTTGCGATTCC
GGGGCGAAGTGTACCACGGCTATCACTTCAGTTGCACGGCCTGCGGCACA
GAGTTGGATTCCACTGCTCGGGAGGTCAAGAGCCGGCCAGGATTGGCTGC
TAACGATATGAACGAACTGTATTGTCTGCGTTGTCACGATAAAATGGGCA
TTCCCATATGTGGTGCCTGTCGTCGTCCGATTGAGGAGAGGGTGGTAACG
GCGCTCGGAAAGCACTGGCATGTGGAACATTTCGTGTGCGCCAAGTGCGA
GAAACCCTTCTTGGGTCACCGACACTACGAGAAGCGGGGATTGGCCTACT
GCGAGACGCACTATCATCAGCTCTTTGGCAACCTGTGCTTCGTCTGCAAC
CAGGTTATTGGAGGCGATGTTTTCACTGCCTTGAAACAGGCCTGGTGTGT
GCACCACTTTGCGTGCTCCGTGTGCGAC
MXO01058.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7954-PB | 1038 | stck-RB | 29..900 | 7..878 | 4310 | 99.7 | Plus |
CG7954-PC | 1047 | stck-RC | 38..909 | 7..878 | 4310 | 99.7 | Plus |
CG7954-PA | 1008 | stck-RA | 1..870 | 9..878 | 4300 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stck-RD | 1500 | CG7954-RD | 253..1124 | 7..878 | 4330 | 99.8 | Plus |
stck-RC | 1335 | CG7954-RC | 92..963 | 7..878 | 4330 | 99.8 | Plus |
stck-RB | 1388 | CG7954-RB | 141..1012 | 7..878 | 4330 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8358649..8358954 | 113..418 | 1530 | 100 | Plus |
3R | 32079331 | 3R | 8359206..8359465 | 560..819 | 1300 | 100 | Plus |
3R | 32079331 | 3R | 8359009..8359150 | 419..560 | 710 | 100 | Plus |
3R | 32079331 | 3R | 8358485..8358590 | 7..112 | 530 | 100 | Plus |
3R | 32079331 | 3R | 8359529..8359588 | 819..878 | 270 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:03 has no hits.
MXO01058.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:37 Download gff for
MXO01058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-PB | 23..900 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:49 Download gff for
MXO01058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7954-PC | 32..909 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:23 Download gff for
MXO01058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7954-RC | 78..955 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:47 Download gff for
MXO01058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-RB | 135..1012 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:52 Download gff for
MXO01058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stck-RB | 135..1012 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:52 Download gff for
MXO01058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8358479..8358590 | 1..112 | 98 | -> | Plus |
3R | 8358649..8358954 | 113..418 | 100 | -> | Plus |
3R | 8359009..8359150 | 419..560 | 100 | -> | Plus |
3R | 8359207..8359465 | 561..819 | 100 | -> | Plus |
3R | 8359530..8359588 | 820..878 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:47 Download gff for
MXO01058.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4184201..4184312 | 1..112 | 98 | -> | Plus |
arm_3R | 4184371..4184676 | 113..418 | 100 | -> | Plus |
arm_3R | 4184731..4184872 | 419..560 | 100 | -> | Plus |
arm_3R | 4184929..4185187 | 561..819 | 100 | -> | Plus |
arm_3R | 4185252..4185310 | 820..878 | 96 | | Plus |