MXO01059.5prime Sequence
888 bp (831 high quality bases) assembled on 2006-12-21
> MXO01059.5prime
CAGTCGACATGGTTACCGGCGTAACAGCAGCCAACATGACCAACGTTCTG
GGCACCGCCGTTGTGCCGGCCCAGCTCAAGGAGACGCCGCTCAAAAGTGA
CCGTCGGTCGAACAAGCCCATCATGGAGAAACGCCGACGTGCCCGTATTA
ACAACTGTCTCAATGAACTCAAGACTCTGATTCTGGATGCCACCAAAAAA
GACCCGGCTCGCCACTCCAAATTGGAAAAGGCCGACATTCTGGAGAAGAC
AGTAAAGCATCTGCAGGAGCTGCAGCGCCAGCAGGCAGCCATGCAGCAGG
CCGCCGATCCCAAGATTGTGAACAAATTCAAGGCCGGATTCGCCGACTGT
GTGAACGAGGTTAGCCGCTTTCCCGGCATCGAGCCCGCCCAGCGTCGTCG
CCTGCTACAGCACCTGAGCAACTGCATCAATGGCGTTAAGACAGAGCTGC
ACCAGCAGCAGCGCCAGCAGCAACAGCAGTCCATCCACGCCCAGATGCTG
CCCTCGCCGCCCAGCTCGCCGGAGCAGGATAGCCAGCAGGGAGCAGCGGC
ACCCTACCTCTTTGGTATCCAGCAGACGGCCAGCGGTTACTTTCTGCCCA
ATGGCATGCAGGTGATCCCCACCAAGCTGCCCAACGGTAGCATTGCCCTC
GTGTTGCCCCAGAGCCTGCCCCAGCAGCAGCAGCAACAGTTGCTGCAGCA
CCAACAGCAGCAGCAGCAACTCGCCGTCGCAGCAGCAGCAGCGGCCGCAG
CAGCAGCACAACAGCAACCCATGTTGGTCAGCATGCCCCAGCGTACAGCC
AGCACCGGATCCGCCAGCTCGCACTCCTCCGCCGGATACGAGTCGGCGCC
CGGAAGCAGCAGCAGCTGTAGCTACGCCCCGCCCAGTC
MXO01059.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6494-PA | 1014 | h-RA | 1..880 | 9..888 | 4400 | 100 | Plus |
| CG6494-PB | 1014 | h-RB | 1..880 | 9..888 | 4400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| h-RB | 2335 | CG6494-RB | 488..1371 | 5..888 | 4405 | 99.9 | Plus |
| h-RA | 2139 | CG6494-RA | 292..1175 | 5..888 | 4405 | 99.9 | Plus |
| dpn-RA | 2036 | CG8704-RA | 412..585 | 111..284 | 360 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8677605..8678289 | 204..888 | 3425 | 100 | Plus |
| 3L | 28110227 | 3L | 8676246..8676348 | 5..107 | 500 | 99 | Plus |
| 3L | 28110227 | 3L | 8677371..8677467 | 107..203 | 485 | 100 | Plus |
| 2R | 25286936 | 2R | 8230422..8230502 | 284..204 | 210 | 84 | Minus |
Blast to na_te.dros performed 2014-11-28 20:03:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2825..2930 | 656..767 | 186 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..7079 | 389..757 | 168 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6868 | 390..482 | 167 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2665 | 402..740 | 162 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6825 | 390..478 | 154 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6847 | 390..479 | 150 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1051..1152 | 381..478 | 147 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1583 | 406..479 | 140 | 70.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1129 | 400..479 | 140 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2313..2386 | 408..478 | 138 | 71.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2372 | 417..479 | 132 | 71.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1141 | 401..479 | 131 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1068..1109 | 439..480 | 129 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2473 | 390..478 | 128 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6771 | 441..478 | 120 | 82.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1081..1120 | 441..479 | 116 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7392..7532 | 445..586 | 111 | 58.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1087 | 447..479 | 111 | 81.8 | Plus |
MXO01059.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:39 Download gff for
MXO01059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6494-PB | 1..880 | 9..888 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:50 Download gff for
MXO01059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6494-PB | 1..880 | 9..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:25 Download gff for
MXO01059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6494-RB | 483..1371 | 1..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:52 Download gff for
MXO01059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| h-RA | 287..1175 | 1..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:57 Download gff for
MXO01059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| h-RA | 287..1175 | 1..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:57 Download gff for
MXO01059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8676241..8676348 | 1..107 | 96 | -> | Plus |
| 3L | 8677372..8677467 | 108..203 | 100 | -> | Plus |
| 3L | 8677605..8678289 | 204..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:52 Download gff for
MXO01059.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8669341..8669448 | 1..107 | 96 | -> | Plus |
| arm_3L | 8670472..8670567 | 108..203 | 100 | -> | Plus |
| arm_3L | 8670705..8671389 | 204..888 | 100 | | Plus |
