Clone MXO01060 Report

Search the DGRC for MXO01060

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:60
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG1407-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01060.5prime Sequence

855 bp (794 high quality bases) assembled on 2006-12-21

> MXO01060.5prime
CAGTCGACATGGGTAACGACGATCATCGACGGCGGAAGACACCCTGCGGA
TTTTGTATGGCAGTCTTCAAATGGATACCAGTGCTATTTATCACCGCGGT
AATAGCTTGGTCCTATTACGCTTATGTGGTGGAGCTATGCATCCGCAACT
CGGAGAACCGCATTGGTATGATCTTCATGCTTCTGTTCTACCACCTCTTC
CTCACCCTGTTCATGTGGTCGTACTGGCGCACCATAATGACCTCCGTAGG
CCGAATACCAGATCAATGGAGGATACCGGATGAGGAAGTGTCGCGACTTT
TCCGAGCCGACAGCCCGGACACCCAGAAACGCATTCTTAACAACTTTGCG
CGCGATTTGCCAGTAACGAATCGCACAATGAATGGTTCGGTGCGGTTCTG
CGAAAAGTGCAAGATCATCAAGCCAGACCGAGCTCACCACTGTAGTGTGT
GCAGTTGCTGCGTACTGAAGATGGATCACCACTGCCCCTGGGTAAACAAC
TGCGTTAACTTTTACAACTACAAGTACTTCGTGTTGTTCCTGGGCTATGC
TCTTGTCTACTGCCTGTATGTGGCTTTTACCTCGCTACACGACTTTGTCG
AGTTCTGGAAGGTAGGTGCAGGACAGCTAAATGCCAGTGGAATGGGTCGT
TTTCACATCTTGTTCCTGTTCTTCATTGCCATTATGTTTGCCATTAGTTT
GGTGAGTTTATTTGGCTACCACATCTACCTTGTGCTGGTGAATCGCACGA
CATTGGAGTCGTTCAGGGCTCCGATCTTCCGCGTTGGCGGCCCCGATAAG
AATGGTTATAACTTGGGGCGTTATGCCAATTTCTGCGAAGTATTTGGTGA
CGACT

MXO01060.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1407-PB 1017 CG1407-RB 1..847 9..855 4235 100 Plus
CG1407-PA 1332 CG1407-RA 1..847 9..855 4235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1407-RD 1857 CG1407-RD 365..1211 9..855 4235 100 Plus
CG1407-RA 2238 CG1407-RA 365..1211 9..855 4235 100 Plus
CG1407-RB 1857 CG1407-RB 365..1211 9..855 4235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10031579..10031827 621..373 1245 100 Minus
2R 25286936 2R 10032393..10032529 145..9 685 100 Minus
2R 25286936 2R 10031284..10031419 756..621 680 100 Minus
2R 25286936 2R 10032214..10032335 266..145 610 100 Minus
2R 25286936 2R 10032019..10032125 373..267 535 100 Minus
2R 25286936 2R 10031116..10031215 855..756 500 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:06:48 has no hits.

MXO01060.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:41 Download gff for MXO01060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1407-PB 1..847 9..855 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:50 Download gff for MXO01060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1407-PA 1..847 9..855 100   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:28 Download gff for MXO01060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1407-RA 353..1206 1..855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:03 Download gff for MXO01060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1407-RB 358..1211 1..855 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:57 Download gff for MXO01060.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1407-RB 358..1211 1..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:57 Download gff for MXO01060.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10031580..10031826 374..620 100 <- Minus
2R 10032019..10032125 267..373 100 <- Minus
2R 10032214..10032335 145..266 100 <- Minus
2R 10032394..10032534 1..144 97   Minus
2R 10031284..10031419 621..756 100 <- Minus
2R 10031116..10031214 757..855 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:03 Download gff for MXO01060.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5919899..5920039 1..144 97   Minus
arm_2R 5918621..5918719 757..855 100 <- Minus
arm_2R 5918789..5918924 621..756 100 <- Minus
arm_2R 5919085..5919331 374..620 100 <- Minus
arm_2R 5919524..5919630 267..373 100 <- Minus
arm_2R 5919719..5919840 145..266 100 <- Minus