MXO01060.5prime Sequence
855 bp (794 high quality bases) assembled on 2006-12-21
> MXO01060.5prime
CAGTCGACATGGGTAACGACGATCATCGACGGCGGAAGACACCCTGCGGA
TTTTGTATGGCAGTCTTCAAATGGATACCAGTGCTATTTATCACCGCGGT
AATAGCTTGGTCCTATTACGCTTATGTGGTGGAGCTATGCATCCGCAACT
CGGAGAACCGCATTGGTATGATCTTCATGCTTCTGTTCTACCACCTCTTC
CTCACCCTGTTCATGTGGTCGTACTGGCGCACCATAATGACCTCCGTAGG
CCGAATACCAGATCAATGGAGGATACCGGATGAGGAAGTGTCGCGACTTT
TCCGAGCCGACAGCCCGGACACCCAGAAACGCATTCTTAACAACTTTGCG
CGCGATTTGCCAGTAACGAATCGCACAATGAATGGTTCGGTGCGGTTCTG
CGAAAAGTGCAAGATCATCAAGCCAGACCGAGCTCACCACTGTAGTGTGT
GCAGTTGCTGCGTACTGAAGATGGATCACCACTGCCCCTGGGTAAACAAC
TGCGTTAACTTTTACAACTACAAGTACTTCGTGTTGTTCCTGGGCTATGC
TCTTGTCTACTGCCTGTATGTGGCTTTTACCTCGCTACACGACTTTGTCG
AGTTCTGGAAGGTAGGTGCAGGACAGCTAAATGCCAGTGGAATGGGTCGT
TTTCACATCTTGTTCCTGTTCTTCATTGCCATTATGTTTGCCATTAGTTT
GGTGAGTTTATTTGGCTACCACATCTACCTTGTGCTGGTGAATCGCACGA
CATTGGAGTCGTTCAGGGCTCCGATCTTCCGCGTTGGCGGCCCCGATAAG
AATGGTTATAACTTGGGGCGTTATGCCAATTTCTGCGAAGTATTTGGTGA
CGACT
MXO01060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-PB | 1017 | CG1407-RB | 1..847 | 9..855 | 4235 | 100 | Plus |
CG1407-PA | 1332 | CG1407-RA | 1..847 | 9..855 | 4235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1407-RD | 1857 | CG1407-RD | 365..1211 | 9..855 | 4235 | 100 | Plus |
CG1407-RA | 2238 | CG1407-RA | 365..1211 | 9..855 | 4235 | 100 | Plus |
CG1407-RB | 1857 | CG1407-RB | 365..1211 | 9..855 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10031579..10031827 | 621..373 | 1245 | 100 | Minus |
2R | 25286936 | 2R | 10032393..10032529 | 145..9 | 685 | 100 | Minus |
2R | 25286936 | 2R | 10031284..10031419 | 756..621 | 680 | 100 | Minus |
2R | 25286936 | 2R | 10032214..10032335 | 266..145 | 610 | 100 | Minus |
2R | 25286936 | 2R | 10032019..10032125 | 373..267 | 535 | 100 | Minus |
2R | 25286936 | 2R | 10031116..10031215 | 855..756 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:06:48 has no hits.
MXO01060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:41 Download gff for
MXO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-PB | 1..847 | 9..855 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:50 Download gff for
MXO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-PA | 1..847 | 9..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:28 Download gff for
MXO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RA | 353..1206 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:03 Download gff for
MXO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 358..1211 | 1..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:57 Download gff for
MXO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1407-RB | 358..1211 | 1..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:57 Download gff for
MXO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10031580..10031826 | 374..620 | 100 | <- | Minus |
2R | 10032019..10032125 | 267..373 | 100 | <- | Minus |
2R | 10032214..10032335 | 145..266 | 100 | <- | Minus |
2R | 10032394..10032534 | 1..144 | 97 | | Minus |
2R | 10031284..10031419 | 621..756 | 100 | <- | Minus |
2R | 10031116..10031214 | 757..855 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:03 Download gff for
MXO01060.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5919899..5920039 | 1..144 | 97 | | Minus |
arm_2R | 5918621..5918719 | 757..855 | 100 | <- | Minus |
arm_2R | 5918789..5918924 | 621..756 | 100 | <- | Minus |
arm_2R | 5919085..5919331 | 374..620 | 100 | <- | Minus |
arm_2R | 5919524..5919630 | 267..373 | 100 | <- | Minus |
arm_2R | 5919719..5919840 | 145..266 | 100 | <- | Minus |