MXO01061.5prime Sequence
891 bp (834 high quality bases) assembled on 2006-12-21
> MXO01061.5prime
CAGTCGACATGGACATTTCGCAAATGTGCCGCGTTTGCAGGGACGAATCC
GACTGCCTGTTGGATATATATACAGAGCCATATGCCTCCTCCAATCGGGT
CCAGGAGCAGGAGCCGGTCTTGGCCACAATGCTGAGGGAATGCAGCGGAT
GCAGCGTGCATAAGGAGGACGGAATGCCGCAGTTCATCTGCGTGGAGTGT
GCGGAGGCCGTAAGAAATGCCTATCGGCTAAGACGGCAATGCCGAAAGAG
CCATCAGTACTTTGAACAGCTGCGTCTGATGATGAAGGAGCTGGACGATA
TAGAGTATTGCCTGAATATAGGGGATAACATAGAACCACAGATGCCGGTC
TCGGTAATGGAAGCTGGTAAAACGCCGGAGACATCCGAACCTCTTTTAGT
TGAGCTTGTGCAGGTTAAGTACATGCCTCCAGAGCCGAAGCCAATATCTT
CTCCTCTTCCAGACAACAATGAGCATAAGCTCGCGCAAAGTTATTCTCCA
GCAAAGACGCCACACAATAAGTCCAAGAGGAGGGCGAGATCCTACTCGGA
CAATGACTCATGGAGCCCGGATAGTGAGCTTGAACACGAAGATGATGATA
AAATCTGGAACGCCTCAAAACGGGGCAAACCGAAAAGGGTTCCCGGACCA
TATCGGTGCAAGCTCTGCACACAGTCGTTCACCCAAAAACAAAACCTAGA
GATTCACATGCGCATACATACTGGCGAGCGACCCTACAAGTGCTCCCTAT
GTCCGCGATCCTTTGCCCAGAAGGGCAACCTGCAGAGCCACACACGTTGT
CACACCGGCGAGCGTCCCTTCGGTTGTCCGAACTGCCCCAAGCGCTTCCC
GGCAGTTGGGCAACTGCAAGTCCACACCCGGACTCATACTG
MXO01061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:20:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17359-PA | 1020 | CG17359-RA | 1..841 | 9..849 | 4205 | 100 | Plus |
| CG17359-PA | 1020 | CG17359-RA | 846..883 | 854..891 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17359-RA | 1352 | CG17359-RA | 70..952 | 9..891 | 4370 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:36:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13998300..13999182 | 891..9 | 4370 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:36:52 has no hits.
MXO01061.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:43 Download gff for
MXO01061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17359-PA | 1..883 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:50 Download gff for
MXO01061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17359-PA | 1..883 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:30 Download gff for
MXO01061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17359-RA | 57..947 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:18 Download gff for
MXO01061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17359-RA | 62..952 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:33 Download gff for
MXO01061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17359-RA | 62..952 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:33 Download gff for
MXO01061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13998300..13999186 | 1..891 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:18 Download gff for
MXO01061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13991400..13992286 | 1..891 | 99 | | Minus |
