MXO01064.5prime Sequence
861 bp (832 high quality bases) assembled on 2006-12-21
> MXO01064.5prime
CAGTCGACATGAGCCGAAAGAACGGAAACCAGGACACCTTTCCCAAGACG
GAGAAGATGCAGCGCTACTACGCGGAGCGCGAGACCACAGGACCCGAGTT
CGACGATCGCCTGATAAAGCTTGTGCGCGCCAATCCGGCCATCTATGATG
TCAGCCATCCGCACTATCGCCGTAATCCGGTGCGGGTGGACATATGGGAT
CGCATTGCCAACGAACTGGGCGCCTCCTCCCGATTTCTGCAAACCAAATG
GAAGAACATACGATACAACTATCTGCAGGAGGTCAAGGCGATTGAGACGG
GCCAGGCGAATCCGAACGTACGCAAGCGGCGCTTCACTGAGGATCTATCC
TTTCTGCAGAACACGGCCCAAACCTACAATGTGAAGAAATCCCAGAGCTA
CGTGGCCCAACAGAATGGAATGGGAAGTGACAACGACAGCAATAGCTTTT
TGTATCCCGATCCGGAGCACCTAAAGATCGACGCCTCCGAGGGCTACGAC
ATCATCGAGCTGGACAACAGCGACGATGGCTCAAATAGCGACGACAACGA
GATTGTGCCCGAGTTGCAGCTGGTCATGGGAGAGTCCAAGCAGCAATTAT
CCCTGCCGACGACACTGAACGGCACCAGCAGCAGCAATCACAGCCACGAA
CATGACCAAGCCAGCTCGCCGGCCTCCTCGCCCCTGCTAACGCCGATGGT
TGTAATGGGCAATGGCTATGGCCAGGAGGTGCATCTAGAACAGCAGCAGA
CACAGGAGCAAAAGCCGTTCAAGAATAGCTCGCTGTCCAACGGAGAAGTG
ACCATTGAGCCCATTTACAAGCCTGCGGCTATCAGACGCGCATTACCCAG
CGATTTTCTGA
MXO01064.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12767-PA | 1047 | Dip3-RA | 1..853 | 9..861 | 4265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dip3-RA | 1471 | CG12767-RA | 180..1036 | 5..861 | 4270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18129179..18129811 | 229..861 | 3165 | 100 | Plus |
| 2R | 25286936 | 2R | 18128975..18129101 | 102..228 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 18128673..18128770 | 5..102 | 475 | 99 | Plus |
Blast to na_te.dros performed 2014-11-28 22:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2328..2385 | 723..779 | 116 | 69 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1121 | 723..779 | 116 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6791 | 723..779 | 109 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6812 | 723..779 | 109 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6833 | 723..779 | 109 | 68.4 | Plus |
MXO01064.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:46 Download gff for
MXO01064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip3-PA | 1..852 | 9..860 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:51 Download gff for
MXO01064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12767-PA | 1..852 | 9..860 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:34 Download gff for
MXO01064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12767-RA | 169..1029 | 1..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:13 Download gff for
MXO01064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip3-RA | 175..1035 | 1..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:19 Download gff for
MXO01064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip3-RA | 175..1035 | 1..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:19 Download gff for
MXO01064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18128668..18128770 | 1..102 | 96 | -> | Plus |
| 2R | 18128976..18129101 | 103..228 | 100 | -> | Plus |
| 2R | 18129179..18129810 | 229..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:13 Download gff for
MXO01064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14016173..14016275 | 1..102 | 96 | -> | Plus |
| arm_2R | 14016481..14016606 | 103..228 | 100 | -> | Plus |
| arm_2R | 14016684..14017315 | 229..860 | 100 | | Plus |
