MXO01065.5prime Sequence
930 bp (771 high quality bases) assembled on 2006-12-21
> MXO01065.5prime
CAGTCGACATGGACCAAATGCTAAGCCCCAACTTCTCGATTCCGAGCATC
GGAACGCCGCTCCACCAGATGGAAGCGGACCAGCAGATAGTGGCCAATCC
TGTGTACCATCCTCCGGCTGTATCGCAGCCGGATTCGTTGATGCCGGCAC
CCGGTTCCAGTTCCGTGCAGCACCAGCAGCAGCAACAGCAGTCGGACGCC
AGTGGGGGATCAGGTCTCTTTGGCCACGAACCATCGCTCCCGCTGGCGCA
CAAACAAATGCAGAGTTACCAGCCATCGGCCTCCTATCAGCAGCAGCAGC
AGCAACAGCAGCTCCAGAGTCAGGCGCCCGGCGGCGGTGGGAGCACTCCG
CAGTCCATGATGCAGCCGCAGACGCCGCAGAGCATGATGGCCCACATGAT
GCCCATGAGTGAGCGGAGTGTGGGCGGTTCGGGGGCCGGAGGTGGCGGAG
ATGCCCTGAGCAACATCCACCAGACGATGGGCCCCTCCACGCCGATGACA
CCAGCCACACCAGGTTCCGCTGATCCCGGTATTGTGCCACAACTTCAGAA
CATCGTGTCCACGGTTAATCTGTGCTGCAAACTGGACCTCAAGAAAATAG
CATTGCATGCGAGAAACGCCGAGTACAATCCTAAGCGATTTGCGGCTGTG
ATTATGCGAATCCGAGAGCCCCGGACCACCGCCCTTATTTTCAGCTCCGG
CAAGATGGTGTGCACAGGGGCAAAGAGTGAGGACGACTCCAGACTGGCAG
CGAGAAAGTATGCGCGCATCATCCAAAAGCTCGGTTTCCCTGCAAAGTTC
CTCGACTTTAAGATTCAAAACATGGTCGGCTCCTGCGATGTCAAGTTCCC
CATACGCTTGGAAGGCCTGGTGCTGACCCATTGCAACTTCAGCAGCTACG
AGCCTGAGCTATTTCCCGGCTTAATCTATC
MXO01065.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9874-PA | 1062 | Tbp-RA | 1..922 | 9..930 | 4610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tbp-RA | 1387 | CG9874-RA | 191..1112 | 9..930 | 4610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21686669..21687452 | 792..9 | 3920 | 100 | Minus |
| 2R | 25286936 | 2R | 21686467..21686605 | 930..792 | 695 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6870 | 167..316 | 133 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6932 | 168..321 | 129 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2483 | 167..317 | 127 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6898 | 167..317 | 126 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2494..2536 | 286..328 | 116 | 74.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1113 | 167..196 | 114 | 86.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6825 | 167..190 | 111 | 95.8 | Plus |
MXO01065.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:47 Download gff for
MXO01065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9874-PA | 1..922 | 9..930 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:52 Download gff for
MXO01065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9874-PA | 1..922 | 9..930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:36 Download gff for
MXO01065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9874-RA | 182..1110 | 1..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:41 Download gff for
MXO01065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbp-RA | 184..1112 | 1..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:48 Download gff for
MXO01065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tbp-RA | 184..1112 | 1..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:48 Download gff for
MXO01065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21686467..21686605 | 792..930 | 100 | <- | Minus |
| 2R | 21686670..21687459 | 1..791 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:41 Download gff for
MXO01065.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17573972..17574110 | 792..930 | 100 | <- | Minus |
| arm_2R | 17574175..17574964 | 1..791 | 99 | | Minus |
