MXO01066.5prime Sequence
883 bp (838 high quality bases) assembled on 2006-12-21
> MXO01066.5prime
CAGTCGACATGAGCTCCACGCGTCCGTTTTGCTTCGTTTGCGGCAAGGAG
AAGTCCGTGGGGGTGTTCCAGCTGATAGAAGGCTGCATTGTGCCAGGAAC
CTTTAAGCCCATCAAGGATATACTGAAATACTTCGAGAAGATCATAAACC
AGCGGCTGGAGCTCCTGCCCAACTCGGCCGCCTGCCGGGACTGCCTGGAG
TACCTCTTCAACTACGACAGGCTGGTGAGGAATCTCAGCCAAGTGCAGCG
CCAGATTGCGGACGCACTGCTCGGCTGCAGGCAGGTGGAGGGCAAGGCGG
AGACCAAGCAACAGGCGGCAAAGAGGGCCCGCGTCCAGGTGCCGGCCTTC
AAGATCGTCCAGGCCACCGCCCTCAAGGAGCCCGAAAGGCAGCCGGGCGA
GGAGGATGAGTGCGAGGAATTCATGAAGGAGGAGATGCTGGACGAGGAGT
TCCAGTTCAGCGAGCCGGACGACAGCATGCCGTCGTCGGAGGAGGAGTTC
TTCACCGAGACCACCGAGATACCCTGCCATATCTGCGGCGAGATGTTTTC
CAGCCAGGAGGTGCTCGAGCGGCACATCAAGGCGGACACCTGCCAGAAGA
GCGAGCAGGCCACCTGCAACGTGTGTGGCTTGAAAGTGAAGGACGACGAG
GTACTCGATCTGCATATGAACTTGCACGAGGGCAAAACAGAACTTGAATG
CCGCTACTGCGACAAAAAGTTCTCGCACAAGCGGAACGTCCTGCGCCACA
TGGAGGTGCACTGGGACAAGAAGAAGTACCAGTGCGACAAGTGCGGCGAA
CGCTTCTCGCTCTCCTGGCTGATGTACAACCATCTGATGCGCCACGACGC
CGAGGAGAACGCCCTGATCTGCGAGGTGTGCCA
MXO01066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7938-PA | 1071 | Sry-beta-RA | 1..875 | 9..883 | 4375 | 100 | Plus |
CG17958-PA | 1302 | Sry-delta-RA | 815..855 | 757..797 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-beta-RB | 3300 | CG7938-RB | 95..969 | 9..883 | 4375 | 100 | Plus |
Sry-beta-RA | 1260 | CG7938-RA | 95..969 | 9..883 | 4375 | 100 | Plus |
Sry-alpha-RB | 3353 | CG17957-RB | 219..1022 | 80..883 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30039937..30040740 | 80..883 | 4020 | 100 | Plus |
3R | 32079331 | 3R | 30039813..30039886 | 9..82 | 370 | 100 | Plus |
3R | 32079331 | 3R | 30044196..30044333 | 660..797 | 300 | 81.2 | Plus |
Blast to na_te.dros performed 2014-11-28 21:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 127..162 | 479..514 | 117 | 80.6 | Plus |
MXO01066.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:49 Download gff for
MXO01066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7938-PA | 1..874 | 9..882 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:52 Download gff for
MXO01066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7938-PA | 1..874 | 9..882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:38 Download gff for
MXO01066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7938-RA | 75..955 | 1..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:29 Download gff for
MXO01066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 88..968 | 1..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:04 Download gff for
MXO01066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 88..968 | 1..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:04 Download gff for
MXO01066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30039806..30039885 | 1..81 | 95 | -> | Plus |
3R | 30039939..30040739 | 82..882 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:29 Download gff for
MXO01066.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25865528..25865607 | 1..81 | 95 | -> | Plus |
arm_3R | 25865661..25866461 | 82..882 | 100 | | Plus |