Clone MXO01066 Report

Search the DGRC for MXO01066

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:66
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptSry-beta-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01066.5prime Sequence

883 bp (838 high quality bases) assembled on 2006-12-21

> MXO01066.5prime
CAGTCGACATGAGCTCCACGCGTCCGTTTTGCTTCGTTTGCGGCAAGGAG
AAGTCCGTGGGGGTGTTCCAGCTGATAGAAGGCTGCATTGTGCCAGGAAC
CTTTAAGCCCATCAAGGATATACTGAAATACTTCGAGAAGATCATAAACC
AGCGGCTGGAGCTCCTGCCCAACTCGGCCGCCTGCCGGGACTGCCTGGAG
TACCTCTTCAACTACGACAGGCTGGTGAGGAATCTCAGCCAAGTGCAGCG
CCAGATTGCGGACGCACTGCTCGGCTGCAGGCAGGTGGAGGGCAAGGCGG
AGACCAAGCAACAGGCGGCAAAGAGGGCCCGCGTCCAGGTGCCGGCCTTC
AAGATCGTCCAGGCCACCGCCCTCAAGGAGCCCGAAAGGCAGCCGGGCGA
GGAGGATGAGTGCGAGGAATTCATGAAGGAGGAGATGCTGGACGAGGAGT
TCCAGTTCAGCGAGCCGGACGACAGCATGCCGTCGTCGGAGGAGGAGTTC
TTCACCGAGACCACCGAGATACCCTGCCATATCTGCGGCGAGATGTTTTC
CAGCCAGGAGGTGCTCGAGCGGCACATCAAGGCGGACACCTGCCAGAAGA
GCGAGCAGGCCACCTGCAACGTGTGTGGCTTGAAAGTGAAGGACGACGAG
GTACTCGATCTGCATATGAACTTGCACGAGGGCAAAACAGAACTTGAATG
CCGCTACTGCGACAAAAAGTTCTCGCACAAGCGGAACGTCCTGCGCCACA
TGGAGGTGCACTGGGACAAGAAGAAGTACCAGTGCGACAAGTGCGGCGAA
CGCTTCTCGCTCTCCTGGCTGATGTACAACCATCTGATGCGCCACGACGC
CGAGGAGAACGCCCTGATCTGCGAGGTGTGCCA

MXO01066.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7938-PA 1071 Sry-beta-RA 1..875 9..883 4375 100 Plus
CG17958-PA 1302 Sry-delta-RA 815..855 757..797 180 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-beta-RB 3300 CG7938-RB 95..969 9..883 4375 100 Plus
Sry-beta-RA 1260 CG7938-RA 95..969 9..883 4375 100 Plus
Sry-alpha-RB 3353 CG17957-RB 219..1022 80..883 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30039937..30040740 80..883 4020 100 Plus
3R 32079331 3R 30039813..30039886 9..82 370 100 Plus
3R 32079331 3R 30044196..30044333 660..797 300 81.2 Plus
Blast to na_te.dros performed 2014-11-28 21:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 127..162 479..514 117 80.6 Plus

MXO01066.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:49 Download gff for MXO01066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7938-PA 1..874 9..882 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:52 Download gff for MXO01066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7938-PA 1..874 9..882 100   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:38 Download gff for MXO01066.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7938-RA 75..955 1..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:29 Download gff for MXO01066.5prime
Subject Subject Range Query Range Percent Splice Strand
Sry-beta-RA 88..968 1..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:04 Download gff for MXO01066.5prime
Subject Subject Range Query Range Percent Splice Strand
Sry-beta-RA 88..968 1..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:04 Download gff for MXO01066.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30039806..30039885 1..81 95 -> Plus
3R 30039939..30040739 82..882 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:29 Download gff for MXO01066.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25865528..25865607 1..81 95 -> Plus
arm_3R 25865661..25866461 82..882 100   Plus