MXO01067.5prime Sequence
913 bp (836 high quality bases) assembled on 2006-04-19
> MXO01067.5prime
CAGTCGACATGAGCTCCACGCGTCCGTTTTGCTTCGTTTGCGGCAAGGAG
AAGTCCGTGGGGGTGTTCCAGCTGATAGAAGGCTGCATTGTGCCAGGAAC
CTTTAAGCCCATCAAGGATATACTGAAATACTTCGAGAAGATCATAAACC
AGCGGCTGGAGCTCCTGCCCAACTCGGCCGCCTGCCGGGACTGCCTGGAG
TACCTCTTCAACTACGACAGGCTGGTGAGGAATCTCAGCCAAGTGCAGCG
CCAGATTGCGGACGCACTGCTCGGCTGCAGGCAGGTGGAGGGCAAGGCGG
AGACCAAGCAACAGGCGGCAAAGAGGGCCCGCGTCCAGGTGCCGGCCTTC
AAGATCGTCCAGGCCACCGCCCTCAAGGAGCCCGAAAGGCAGCCGGGCGA
GGAGGATGAGTGCGAGGAATTCATGAAGGAGGAGATGCTGGACGAGGAGT
TCCAGTTCAGCGAGCCGGACGACAGCATGCCGTCGTCGGAGGAGGAGTTC
TTCACCGAGACCACCGAGATACCCTGCCATATCTGCGGCGAGATGTTTTC
CAGCCAGGAGGTGCTCGAGCGGCACATCAAGGCGGACACCTGCCAGAAGA
GCGAGCAGGCCACCTGCAACGTGTGTGGCTTGAAAGTGAAGGACGACGAG
GTACTCGATCTGCATATGAACTTGCACGAGGGCAAAACAGAACTTGAATG
CCGCTACTGCGACAAAAAGTTCTCGCACAAGCGGAACGTCCTGCGCCACA
TGGAGGTGCACTGGGACAAGAAGAAGTACCAGTGCGACAAGTGCGGCGAA
CGCTTCTCGCTCTCCTGGCTGATGTACAACCATCTGATGCGCCACGACGC
CGAGGAGAACGCCCTGATCTGCGAGGTGTGCCACCAGCAATTCAAGACCA
AGCGCACCTACAA
MXO01067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7938-PA | 1071 | Sry-beta-RA | 1..905 | 9..913 | 4500 | 99.8 | Plus |
CG17958-PA | 1302 | Sry-delta-RA | 815..855 | 757..797 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sry-beta-RB | 3300 | CG7938-RB | 95..999 | 9..913 | 4510 | 99.9 | Plus |
Sry-beta-RA | 1260 | CG7938-RA | 95..999 | 9..913 | 4510 | 99.9 | Plus |
Sry-alpha-RB | 3353 | CG17957-RB | 219..1052 | 80..913 | 4155 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30039937..30040770 | 80..913 | 4155 | 99.9 | Plus |
3R | 32079331 | 3R | 30039813..30039886 | 9..82 | 370 | 100 | Plus |
3R | 32079331 | 3R | 30044196..30044333 | 660..797 | 300 | 81.2 | Plus |
Blast to na_te.dros performed 2014-11-28 21:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 127..162 | 479..514 | 117 | 80.6 | Plus |
MXO01067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:51 Download gff for
MXO01067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7938-PA | 1..903 | 9..911 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:53 Download gff for
MXO01067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7938-PA | 1..903 | 9..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:41 Download gff for
MXO01067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7938-RA | 75..984 | 1..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:05 Download gff for
MXO01067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 88..997 | 1..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:03 Download gff for
MXO01067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sry-beta-RA | 88..997 | 1..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:03 Download gff for
MXO01067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30039806..30039885 | 1..81 | 95 | -> | Plus |
3R | 30039939..30040768 | 82..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:05 Download gff for
MXO01067.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25865528..25865607 | 1..81 | 95 | -> | Plus |
arm_3R | 25865661..25866490 | 82..911 | 99 | | Plus |