Clone MXO01067 Report

Search the DGRC for MXO01067

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:67
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG17912-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01067.5prime Sequence

913 bp (836 high quality bases) assembled on 2006-04-19

> MXO01067.5prime
CAGTCGACATGAGCTCCACGCGTCCGTTTTGCTTCGTTTGCGGCAAGGAG
AAGTCCGTGGGGGTGTTCCAGCTGATAGAAGGCTGCATTGTGCCAGGAAC
CTTTAAGCCCATCAAGGATATACTGAAATACTTCGAGAAGATCATAAACC
AGCGGCTGGAGCTCCTGCCCAACTCGGCCGCCTGCCGGGACTGCCTGGAG
TACCTCTTCAACTACGACAGGCTGGTGAGGAATCTCAGCCAAGTGCAGCG
CCAGATTGCGGACGCACTGCTCGGCTGCAGGCAGGTGGAGGGCAAGGCGG
AGACCAAGCAACAGGCGGCAAAGAGGGCCCGCGTCCAGGTGCCGGCCTTC
AAGATCGTCCAGGCCACCGCCCTCAAGGAGCCCGAAAGGCAGCCGGGCGA
GGAGGATGAGTGCGAGGAATTCATGAAGGAGGAGATGCTGGACGAGGAGT
TCCAGTTCAGCGAGCCGGACGACAGCATGCCGTCGTCGGAGGAGGAGTTC
TTCACCGAGACCACCGAGATACCCTGCCATATCTGCGGCGAGATGTTTTC
CAGCCAGGAGGTGCTCGAGCGGCACATCAAGGCGGACACCTGCCAGAAGA
GCGAGCAGGCCACCTGCAACGTGTGTGGCTTGAAAGTGAAGGACGACGAG
GTACTCGATCTGCATATGAACTTGCACGAGGGCAAAACAGAACTTGAATG
CCGCTACTGCGACAAAAAGTTCTCGCACAAGCGGAACGTCCTGCGCCACA
TGGAGGTGCACTGGGACAAGAAGAAGTACCAGTGCGACAAGTGCGGCGAA
CGCTTCTCGCTCTCCTGGCTGATGTACAACCATCTGATGCGCCACGACGC
CGAGGAGAACGCCCTGATCTGCGAGGTGTGCCACCAGCAATTCAAGACCA
AGCGCACCTACAA

MXO01067.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7938-PA 1071 Sry-beta-RA 1..905 9..913 4500 99.8 Plus
CG17958-PA 1302 Sry-delta-RA 815..855 757..797 180 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
Sry-beta-RB 3300 CG7938-RB 95..999 9..913 4510 99.9 Plus
Sry-beta-RA 1260 CG7938-RA 95..999 9..913 4510 99.9 Plus
Sry-alpha-RB 3353 CG17957-RB 219..1052 80..913 4155 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30039937..30040770 80..913 4155 99.9 Plus
3R 32079331 3R 30039813..30039886 9..82 370 100 Plus
3R 32079331 3R 30044196..30044333 660..797 300 81.2 Plus
Blast to na_te.dros performed 2014-11-28 21:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRIM 3111 Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). 127..162 479..514 117 80.6 Plus

MXO01067.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:51 Download gff for MXO01067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7938-PA 1..903 9..911 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:53 Download gff for MXO01067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7938-PA 1..903 9..911 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:41 Download gff for MXO01067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7938-RA 75..984 1..911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:05 Download gff for MXO01067.5prime
Subject Subject Range Query Range Percent Splice Strand
Sry-beta-RA 88..997 1..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:03 Download gff for MXO01067.5prime
Subject Subject Range Query Range Percent Splice Strand
Sry-beta-RA 88..997 1..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:03 Download gff for MXO01067.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30039806..30039885 1..81 95 -> Plus
3R 30039939..30040768 82..911 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:05 Download gff for MXO01067.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25865528..25865607 1..81 95 -> Plus
arm_3R 25865661..25866490 82..911 99   Plus