MXO01068.5prime Sequence
880 bp (813 high quality bases) assembled on 2006-12-21
> MXO01068.5prime
CAGTCGACATGGCACTGCAGACATACGGGGACAAGCCGGTGGCCTTCCAG
CTGGAGGAGGGCGGCGAGTACTACTACGTGGGCTCGGAAGTGGGCAACTA
CATGCGCCACTTCCGCGGCATTCTGTACAAGAAGTACCCGGGAATGACCC
GCATCGTCCTGTCCAACGAGGAGCGCAAGCGGCTGGCTGAGTCCGGCCTC
AGCTCCCACATCTTAGCCAGCTCTGTATCGCTGCTCCGCGCCGTAGAGGT
GGATGATATCATGGCCGGCAACGATGAAAAGTATCGCGCCGTCTCCGTGA
ACACTTCCGATACGCCAGTGCCGCGGGAGAGCAAGTCAAAGAAGCAGCCA
CAGTATGTGCCCACGATGCCGAACTCCAGCCACCTGGACGCAGTGCCACA
GGCCACGCCAATCAACCGAAACCGAGTGCACACGAAGAAGGTTCGCACAT
TCCCGATGTGTTTCGACGACACGGATCCCACGGCTAGCCTGGAGAATGCG
GCGCAGAAGGAGTGCCTGGTGCCCATTCGACTGGACATGGAGCTAGAGGG
TCAAAAGCTGCGCGACACCTTCACGTGGAACAAGAACGAGAGCATGATTA
CTCCGGAGCAGTTTGCCGAGGTGCTGTGCGACGACCTGGACCTCAATCCC
CTGCCCTTTGTGCCGGCTATTGCACAGGCCATCCGACAGCAGATCGAAGC
CTTTCCCAACGATCCCCCCATCCTCGAGGAGACCTGCGACCAGCGGGTCA
TTGTTAAGCTGAACATTCACGTGGGCAACACCTCGCTCGTCGACCAGGTC
GAGTGGGACATGTCCGAGAAGAACAACAACCCCGAGGAGTTTGCCATTAA
ACTCTGTGCGGAATTGGGATTGGGAAGAGA
MXO01068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1064-PA | 1113 | Snr1-RA | 1..867 | 9..875 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snr1-RA | 1335 | CG1064-RA | 132..1005 | 7..880 | 4355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5471825..5472424 | 281..880 | 2985 | 99.8 | Plus |
| 3R | 32079331 | 3R | 5471057..5471333 | 7..283 | 1385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:24:35 has no hits.
MXO01068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:52 Download gff for
MXO01068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-PA | 1..871 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:53 Download gff for
MXO01068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1064-PA | 1..871 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:43 Download gff for
MXO01068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1064-RA | 135..1013 | 1..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:10 Download gff for
MXO01068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 126..1004 | 1..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:59 Download gff for
MXO01068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snr1-RA | 126..1004 | 1..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:59 Download gff for
MXO01068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5471051..5471330 | 1..280 | 98 | -> | Plus |
| 3R | 5471825..5472423 | 281..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:10 Download gff for
MXO01068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1296773..1297052 | 1..280 | 98 | -> | Plus |
| arm_3R | 1297547..1298145 | 281..879 | 99 | | Plus |
