MXO01069.5prime Sequence
882 bp (836 high quality bases) assembled on 2006-12-21
> MXO01069.5prime
CAGTCGACATGTACAAGCGCAAAACCGCGAGTATTGTTAAAAGAGACAGC
TCCGCAGCGGGCACCACCTCCTCGGCTATGATGATGAAGGTGGATTCGGC
TGAGACTTCGGTCCGGTCGCAGAGCTACGAGTCTACACCCGTTAGCATGG
ACACATCACCGGATCCTCCAACGCCAATCAAGTCTCCGTCGAATTCACAA
TCGCAATCGCAGCCTGGACAACAGCGCTCCGTGGGCTCACTGGTCCTGCT
CACACAGAAGTTTGTGGATCTCGTGAAGGCCAACGAAGGATCCATCGACC
TGAAAGCGGCAACCAAAATCTTGGACGTACAGAAGCGCCGAATATACGAT
ATTACCAATGTTTTAGAGGGCATTGGACTAATTGATAAGGGCAGACACTG
CTCCCTAGTGCGCTGGCGCGGAGGGGGCTTTAACAATGCCAAGGACCAAG
AGAACTACGACCTGGCACGTAGCCGGACTAATCATTTGAAAATGTTGGAG
GATGACCTAGACAGGCAACTGGAGTATGCACAGCGCAATCTGCGCTACGT
TATGCAGGATCCCTCGAATAGGTCGTATGCATATGTGACACGTGATGATC
TGCTGGACATCTTTGGAGATGATTCCGTATTCACAATACCTAATTATGAC
GAGGAAGTAGATATCAAGCGTAATCATTACGAGCTGGCCGTGTCGCTGGA
CAATGGCAGCGCAATTGACATTCGCCTGGTGACGAACCAAGGAAAGAGTA
CTACAAATCCGCACGATGTGGATGGGTTCTTTGACTATCACCGTCTGGAC
ACGCCCTCACCCTCGACGTCGTCGCACTCCAGCGAGGATGGTAACGCTCC
AGCATGCGCGGGGGAACGTGATCACCGACGAG
MXO01069.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1071-PA | 1113 | E2f2-RA | 1..855 | 9..863 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E2f2-RB | 2002 | CG1071-RB | 706..1579 | 8..882 | 4350 | 99.9 | Plus |
| E2f2-RA | 1485 | CG1071-RA | 189..1062 | 8..882 | 4350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21155743..21156044 | 309..8 | 1510 | 100 | Minus |
| 2L | 23513712 | 2L | 21155107..21155366 | 677..418 | 1300 | 100 | Minus |
| 2L | 23513712 | 2L | 21154782..21154985 | 882..678 | 975 | 99.5 | Minus |
| 2L | 23513712 | 2L | 21155572..21155682 | 418..308 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:57:42 has no hits.
MXO01069.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:54 Download gff for
MXO01069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f2-PA | 1..873 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:53 Download gff for
MXO01069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1071-PA | 1..873 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:45 Download gff for
MXO01069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1071-RA | 197..1075 | 1..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:51 Download gff for
MXO01069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f2-RA | 184..1062 | 1..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:43 Download gff for
MXO01069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f2-RA | 184..1062 | 1..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:43 Download gff for
MXO01069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21155572..21155681 | 309..418 | 100 | <- | Minus |
| 2L | 21155744..21156049 | 1..308 | 98 | | Minus |
| 2L | 21154782..21154985 | 678..882 | 99 | <- | Minus |
| 2L | 21155107..21155365 | 419..677 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:51 Download gff for
MXO01069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21154782..21154985 | 678..882 | 99 | <- | Minus |
| arm_2L | 21155107..21155365 | 419..677 | 100 | <- | Minus |
| arm_2L | 21155572..21155681 | 309..418 | 100 | <- | Minus |
| arm_2L | 21155744..21156049 | 1..308 | 98 | | Minus |
