MXO01070.5prime Sequence
892 bp (833 high quality bases) assembled on 2006-12-21
> MXO01070.5prime
CAGTCGACATGCCGAATCGTAATTGCCGGACTTGCGGCCTGTTCATTTTC
TGTTCGACGCCCAGTAACCTCTTCGAGGAGCCCAATTCCGTAATGCTGCA
CCAGATCGAGGTTCTTACTGGTTTGTTTTTGCTCGGCGGACCCGGGAACG
AGCTGCCCCCCTTTATTTGCTCACCCTGCGAATTGGACCTGCAGACGGCG
ATTGCTTTCCGGGAACGTGTGATTCGAACCCAAAAAACGCTGCAGGAAAG
TCCCAACCTGGGGAACGCGGAATTGATCGAATCCTTCGCAGTTGGTGTGG
AGAAGGAGATTCAGTACGCTGAAGAGGTCACCGAGATCGAGGTTATAGAC
CTTCTACCCGAGGAACACCTGCTGGAAGAGACGGAAGAGCCGTACGAAAT
ATGTGAGCAGAACGAGCAGCCCCAAGTGAAGGTTCCTGCGCAGGAGAAGA
AGCTCCGCAGAAGTACAAAGACCACGCCCACAGTCTTTACCTCCGTTAAG
TTTGCGGACAATAGCCAGGCCACGCGCACCCAGTGGAGCAGACTCACCGA
GGACGAAGTGGTGGCCCTAAAGCGGGAGCGACGCAAGCGGGATTGCATAT
GCGAGCAGTGTGGCCGGCACTTCACCTGCCCCAGCAACTTCAAGTTGCAC
CTCCTCCGACACACCGGCGTAAAGAGCTTTGCCTGTGACCAGTGCTCCCA
GCAGTTCTACACTGCTACGCTTCTGCGGCGCCACCAAGAACTGCATGCGG
GGAATGCTTTGTTTCAGTGTCGCTACTGCGAGGCAACCTACAGCAACGCC
AGCGGACGCATCCAGCACGAACGCATGCGCCACACGAATGTCAAGCCCTT
CACGTGCAAGGAATGCAATAAAAGCTTTGCCATGAGCGGGAA
MXO01070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1792-PA | 1119 | CG1792-RA | 1..881 | 9..889 | 4405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1792-RA | 1344 | CG1792-RA | 100..980 | 9..889 | 4405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31616575..31617273 | 129..827 | 3495 | 100 | Plus |
| 3R | 32079331 | 3R | 31616402..31616521 | 9..128 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 31617349..31617411 | 827..889 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:37:57 has no hits.
MXO01070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:56 Download gff for
MXO01070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1792-PA | 1..881 | 9..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:54 Download gff for
MXO01070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1792-PA | 1..881 | 9..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:47 Download gff for
MXO01070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1792-RA | 63..943 | 9..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:36 Download gff for
MXO01070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1792-RA | 100..982 | 9..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:06 Download gff for
MXO01070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1792-RA | 100..982 | 9..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:06 Download gff for
MXO01070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31616402..31616521 | 9..128 | 100 | -> | Plus |
| 3R | 31616575..31617272 | 129..826 | 100 | -> | Plus |
| 3R | 31617349..31617413 | 827..892 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:36 Download gff for
MXO01070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27442124..27442243 | 9..128 | 100 | -> | Plus |
| arm_3R | 27442297..27442994 | 129..826 | 100 | -> | Plus |
| arm_3R | 27443071..27443135 | 827..892 | 98 | | Plus |
