MXO01071.5prime Sequence
890 bp (808 high quality bases) assembled on 2006-12-21
> MXO01071.5prime
CAGTCGACATGGAGGACCCCAATCGCATGTTGGCCCACACCGGCGGCATG
ATGGCTCCGCAAGGATACGGCTTGTCTGGCCAGGATGATGGCCAGAATGC
CGGCAGCGAGAACGAGGTGCGCAAGCAGAAGGACATCGGCGAGATATTGC
AACAGATAATGAGTATCTCGGAGCAATCACTTGACGAGGCCCAGGCCAGA
AAACATACACTAAACTGTCACCGAATGAAGCCGGCACTTTTCTCTGTACT
TTGCGAAATCAAGGAGAAGACCGTCCTCTCGATTCGCAACACCCAGGAGG
AGGAGCCCCCAGATCCGCAACTGATGCGCTTGGACAACATGCTGATTGCC
GAGGGCGTGGCCGGACCCGAGAAGGGCGGTGGCGGAGCAGCGGCTGCCTC
TGCGGCTGCGGCCAGCCAGGGCGGTTCCCTGTCCATCGATGGTGCTGACA
ATGCCATTGAGCATTCCGACTACCGTGCCAAGCTGGCACAGATCCGTCAA
ATATATCACCAGGAATTGGAGAAGTACGAGCAGGCATGCAACGAGTTCAC
CACGCATGTCATGAATCTTCTACGCGAACAGAGTCGCACGAGACCCATTA
CACCAAAGGAAATCGAGCGAATGGTGCAGATCATCCACAAAAAGTTTAGT
TCCATACAAATGCAGCTGAAGCAGTCGACCTGCGAGGCTGTAATGATACT
TCGTTCGCGTTTCCTGGACGCACGCCGCANACGCCGCAATTTCAGCAAGC
AGGCATCCGAGATTCTCAACGAGTACTTCTACAGTCACTTGAGCAACCCA
TATCCATCCGAAGAGGCCAAAGAGGAGTTGGCACGAAAGTGTGGCATCAC
GGTCTCGCAAGTATCGAATTGGTTTGGGCACAAGCGTATT
MXO01071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8933-PB | 1131 | exd-RB | 1..882 | 9..890 | 4341 | 99.6 | Plus |
CG8933-PA | 1131 | exd-RA | 1..882 | 9..890 | 4341 | 99.6 | Plus |
CG8933-PC | 1131 | exd-RC | 1..882 | 9..890 | 4341 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exd-RE | 2883 | CG8933-RE | 215..1097 | 8..890 | 4374 | 99.7 | Plus |
exd-RD | 2930 | CG8933-RD | 262..1144 | 8..890 | 4374 | 99.7 | Plus |
exd-RA | 2386 | CG8933-RA | 231..1113 | 8..890 | 4374 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15993964..15994283 | 273..592 | 1600 | 100 | Plus |
X | 23542271 | X | 15993508..15993773 | 8..273 | 1330 | 100 | Plus |
X | 23542271 | X | 15994345..15994607 | 591..853 | 1304 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:07 has no hits.
MXO01071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:57 Download gff for
MXO01071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-PC | 1..882 | 9..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:54 Download gff for
MXO01071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8933-PC | 1..882 | 9..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:49 Download gff for
MXO01071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8933-RB | 134..1022 | 1..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:44 Download gff for
MXO01071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RA | 225..1113 | 1..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:11 Download gff for
MXO01071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exd-RA | 225..1113 | 1..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:11 Download gff for
MXO01071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15993502..15993773 | 1..273 | 98 | -> | Plus |
X | 15993965..15994283 | 274..592 | 100 | -> | Plus |
X | 15994347..15994605 | 593..851 | 99 | -> | Plus |
X | 15994685..15994723 | 852..890 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:44 Download gff for
MXO01071.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15887535..15887806 | 1..273 | 98 | -> | Plus |
arm_X | 15887998..15888316 | 274..592 | 100 | -> | Plus |
arm_X | 15888380..15888638 | 593..851 | 99 | -> | Plus |
arm_X | 15888718..15888756 | 852..890 | 94 | | Plus |