Clone MXO01071 Report

Search the DGRC for MXO01071

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:71
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptexd-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01071.5prime Sequence

890 bp (808 high quality bases) assembled on 2006-12-21

> MXO01071.5prime
CAGTCGACATGGAGGACCCCAATCGCATGTTGGCCCACACCGGCGGCATG
ATGGCTCCGCAAGGATACGGCTTGTCTGGCCAGGATGATGGCCAGAATGC
CGGCAGCGAGAACGAGGTGCGCAAGCAGAAGGACATCGGCGAGATATTGC
AACAGATAATGAGTATCTCGGAGCAATCACTTGACGAGGCCCAGGCCAGA
AAACATACACTAAACTGTCACCGAATGAAGCCGGCACTTTTCTCTGTACT
TTGCGAAATCAAGGAGAAGACCGTCCTCTCGATTCGCAACACCCAGGAGG
AGGAGCCCCCAGATCCGCAACTGATGCGCTTGGACAACATGCTGATTGCC
GAGGGCGTGGCCGGACCCGAGAAGGGCGGTGGCGGAGCAGCGGCTGCCTC
TGCGGCTGCGGCCAGCCAGGGCGGTTCCCTGTCCATCGATGGTGCTGACA
ATGCCATTGAGCATTCCGACTACCGTGCCAAGCTGGCACAGATCCGTCAA
ATATATCACCAGGAATTGGAGAAGTACGAGCAGGCATGCAACGAGTTCAC
CACGCATGTCATGAATCTTCTACGCGAACAGAGTCGCACGAGACCCATTA
CACCAAAGGAAATCGAGCGAATGGTGCAGATCATCCACAAAAAGTTTAGT
TCCATACAAATGCAGCTGAAGCAGTCGACCTGCGAGGCTGTAATGATACT
TCGTTCGCGTTTCCTGGACGCACGCCGCANACGCCGCAATTTCAGCAAGC
AGGCATCCGAGATTCTCAACGAGTACTTCTACAGTCACTTGAGCAACCCA
TATCCATCCGAAGAGGCCAAAGAGGAGTTGGCACGAAAGTGTGGCATCAC
GGTCTCGCAAGTATCGAATTGGTTTGGGCACAAGCGTATT

MXO01071.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8933-PB 1131 exd-RB 1..882 9..890 4341 99.6 Plus
CG8933-PA 1131 exd-RA 1..882 9..890 4341 99.6 Plus
CG8933-PC 1131 exd-RC 1..882 9..890 4341 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
exd-RE 2883 CG8933-RE 215..1097 8..890 4374 99.7 Plus
exd-RD 2930 CG8933-RD 262..1144 8..890 4374 99.7 Plus
exd-RA 2386 CG8933-RA 231..1113 8..890 4374 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15993964..15994283 273..592 1600 100 Plus
X 23542271 X 15993508..15993773 8..273 1330 100 Plus
X 23542271 X 15994345..15994607 591..853 1304 99.6 Plus
Blast to na_te.dros performed on 2014-11-28 19:38:07 has no hits.

MXO01071.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:57 Download gff for MXO01071.5prime
Subject Subject Range Query Range Percent Splice Strand
exd-PC 1..882 9..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:54 Download gff for MXO01071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8933-PC 1..882 9..890 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:49 Download gff for MXO01071.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8933-RB 134..1022 1..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:44 Download gff for MXO01071.5prime
Subject Subject Range Query Range Percent Splice Strand
exd-RA 225..1113 1..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:11 Download gff for MXO01071.5prime
Subject Subject Range Query Range Percent Splice Strand
exd-RA 225..1113 1..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:11 Download gff for MXO01071.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15993502..15993773 1..273 98 -> Plus
X 15993965..15994283 274..592 100 -> Plus
X 15994347..15994605 593..851 99 -> Plus
X 15994685..15994723 852..890 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:44 Download gff for MXO01071.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15887535..15887806 1..273 98 -> Plus
arm_X 15887998..15888316 274..592 100 -> Plus
arm_X 15888380..15888638 593..851 99 -> Plus
arm_X 15888718..15888756 852..890 94   Plus