MXO01072.5prime Sequence
846 bp (825 high quality bases) assembled on 2006-12-21
> MXO01072.5prime
CAGTCGACATGTTTTCGGCTGCCAACAACATGCAATATGGCCAGAATATC
TCCATACCGTACTCACAGCCGCAGGGTGATCTAAACTTTCTCAATGCAGC
CGCTGCGGCCGATCATAAGGGTAAAATCCATCCAAAAATCGAACGTGACC
GGGAAGAAGTCCTCAACCAGCAGATCCTGCAGAATGTCAACCAATCCTGG
CAGACGTTGGCAAATACGGCCAACACGGTGGACTACTCGTCACACCTGCT
CTCCGCCACACTGCCCATCTCCATACAGCACTTCCTCAAGTACTCGGAGA
CGATCAAGAAGGAGTCCACCGGCGATGTCCTGAAGAACGGCACAAATTTG
GCCAGCCTGGCGCTGGGGGGCGTGGCCCTAACGCCCAGCAACAACGGTGC
GAATGGCGGCCACCACAACGGACTGGTGGGCATGGACCATGGCGGTCACA
TGACCAACATGACGGACGCCAACGGAGCGGCGCTGACGAACGGAGCTAGC
AACGGAGTGAATGGCAATGCTAACGGCACTGTGACCAATGGTGGCGCCGG
CGCCGTCTCGAGCTCCGGATCTGTGGGCACAACAAACGCCAGCGGCGGCA
CAGGCACGGCCAGCGGCAAGAAGACCAAAAAGAAGAAACCACCAAAGGAG
AAGAAGCCGCGCCCCAAACCGGGAGAAATCCGCGAGACAAAGGCGCTGGA
TGGCTCGACGCTCTACTGCTGCCCGGAGTGCCAAATGGCCTACCCGGATC
GCAGCCTCATCGAGCAGCACGTCATCTCGCACGCCGTTGAGCGGCGCTTC
GTCTGCGACATCTGCAATGCGGCGCTGAAGCGCAAGGACCACCTGA
MXO01072.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6930-PA | 1143 | CG6930-RA | 1..838 | 9..846 | 4165 | 99.8 | Plus |
| CG6930-PB | 1344 | CG6930-RB | 206..1039 | 13..846 | 4145 | 99.8 | Plus |
| CG6930-PC | 1344 | CG6930-RC | 206..1039 | 13..846 | 4145 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo38-RA | 1522 | CG6930-RA | 151..988 | 9..846 | 4175 | 99.9 | Plus |
| l(3)neo38-RL | 2247 | CG6930-RL | 880..1713 | 13..846 | 4155 | 99.9 | Plus |
| l(3)neo38-RK | 1611 | CG6930-RK | 244..1077 | 13..846 | 4155 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11769417..11770105 | 846..158 | 3430 | 99.9 | Minus |
| 3R | 32079331 | 3R | 11771154..11771300 | 159..13 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:11:56 has no hits.
MXO01072.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:24:59 Download gff for
MXO01072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6930-PA | 1..837 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:55 Download gff for
MXO01072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6930-PA | 1..837 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:51 Download gff for
MXO01072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6930-RA | 145..987 | 1..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:20 Download gff for
MXO01072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RA | 145..987 | 1..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:57 Download gff for
MXO01072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo38-RA | 145..987 | 1..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:57 Download gff for
MXO01072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11769418..11770103 | 160..845 | 99 | <- | Minus |
| 3R | 11771154..11771303 | 8..159 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:20 Download gff for
MXO01072.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7595140..7595825 | 160..845 | 99 | <- | Minus |
| arm_3R | 7596876..7597025 | 8..159 | 98 | | Minus |
