MXO01073.5prime Sequence
881 bp (871 high quality bases) assembled on 2006-12-21
> MXO01073.5prime
CAGTCGACATGCTGAATATGGAAAGCGCGGGTGTCAGTGCTGCGATGGCG
GGTCTGAGCAAATCGCTCACCACGCCCTTCTCCATCAACGATATCCTAAC
GCGCAGCAATCCGGAAACACGTCGCATGTCCAGCGTGGACTCCGAACCGG
AACCGGAAAAGCTGAAACCCTCCTCCGATCGCGAGCGATCGATCTCCAAG
TCGCCGCCACTCTGCTGCCGAGATCTCGGCCTCTACAAGCTGACCCAACC
CAAGGAGATCCAACCAAGTGCCAGGCAACCCAGCAACTATCTGCAGTATT
ATGCGGCGGCGATGGACAACAATAACCACCATCACCAGGCAACGGGCACA
TCGAACTCCAGTGCCGCCGACTACATGCAGCGCAAATTGGCCTATTTTGG
ATCCACCCTCGCTGCTCCTTTGGACATGAGACGCTGCACCAGCAACGATT
CCGACTGCGACTCACCACCGCCATTGAGCAGTTCCCCCTCGGAGTCGCCG
CTATCCCACGACGGCAGTGGATTGAGCCGCAAGAAGCGGTCGCGTGCCGC
CTTCAGCCACGCCCAGGTCTTCGAGTTGGAGCGCCGCTTTGCCCAACAGC
GCTACTTGTCCGGTCCGGAACGCAGCGAGATGGCCAAGAGCCTGCGCCTG
ACGGAGACCCAGGTGAAGATCTGGTTCCAAAACCGCCGCTACAAGACCAA
GCGCAAGCAGATCCAGCAGCACGAGGCCGCCCTTTTGGGTGCCAGCAAGA
GGGTTCCCGTCCAAGTCTTGGTGCGAGAGGATGGCAGCACCACCTACGCT
CACATGGCTGCTCCCGGTGCTGGACACGGCCTCGATCCCGCCCTGATCAA
CATCTACCGCCATCAGCTGCAGCTGGGCTAC
MXO01073.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7902-PA | 1149 | bap-RA | 1..868 | 9..876 | 4340 | 100 | Plus |
| CG1897-PA | 1548 | Dr-RA | 1372..1415 | 642..685 | 145 | 93.1 | Plus |
| CG6172-PB | 1734 | vnd-RB | 1309..1367 | 645..703 | 145 | 89.8 | Plus |
| CG6172-PA | 2172 | vnd-RA | 1747..1805 | 645..703 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bap-RA | 1449 | CG7902-RA | 136..1008 | 9..881 | 4350 | 99.9 | Plus |
| vnd-RB | 3412 | CG6172-RB | 2147..2205 | 645..703 | 205 | 89.8 | Plus |
| vnd-RA | 3033 | CG6172-RA | 2100..2158 | 645..703 | 205 | 89.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21389015..21389459 | 9..453 | 2225 | 100 | Plus |
| 3R | 32079331 | 3R | 21389580..21390008 | 453..881 | 2130 | 99.8 | Plus |
| X | 23542271 | X | 596886..596944 | 645..703 | 205 | 89.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:46:29 has no hits.
MXO01073.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:01 Download gff for
MXO01073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bap-PA | 1..873 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:55 Download gff for
MXO01073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7902-PA | 1..873 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:53 Download gff for
MXO01073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7902-RA | 133..1005 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:43 Download gff for
MXO01073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bap-RA | 136..1008 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:52 Download gff for
MXO01073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bap-RA | 136..1008 | 9..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:52 Download gff for
MXO01073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21389015..21389459 | 9..453 | 100 | -> | Plus |
| 3R | 21389581..21390008 | 454..881 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:43 Download gff for
MXO01073.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17214737..17215181 | 9..453 | 100 | -> | Plus |
| arm_3R | 17215303..17215730 | 454..881 | 99 | | Plus |
