MXO01074.5prime Sequence
869 bp (779 high quality bases) assembled on 2006-12-21
> MXO01074.5prime
CAGTCGACATGGATATAATACAAAAGTCAATCTTCAACAGCGGCCCACAC
AGCAGAGGCATCTACGAGCCGCCTCTCGGCTACTTTACGCCGTATAACAC
ACCACCGTACATAGCCGCCTACTCGGATTCCGGCAGCTGGTTGGCGGATC
ACCACCAACACCACCAGCAGCAGCACCAGCAGCACCAGCAGCAGATGCAG
CACATCAGGTTTCCCACGCCGCCCATCACACCGCCGCGTCCCATCGCCGG
ATACGGATATCGTCAGCGCACCCAGTCCGTGATCATGAAGGCTCGTGGCC
AGCAGGACGAGCTCTGCCGCAGTCCAGTGGAGTTCCCCGACGACAGCAAG
TCCTGCAGCAGCAGCAGCGAGTGCGGCACCGCCAGCGATTTCGTATGCAA
CTGGACAGATTGCGATAGAGTTTTCGACACCTTGGATGCACTGGCACAGC
ACGTGACCCAGCGACATGCGATCGCCAGCCTGACAGACGGACTCTACTAT
TGCCGCTGGCGGGGATGTCAGCGCAGCGAGCGAGGATTCAATGCCCGCTA
CAAGATGCTTGTCCATACCCGCACCCACACGAAGGAGAAGCCACATCGCT
GTCACCTGTGCGAGAAGTCCTTCTCGCGGGCGGAGAACCTGAAGATCCAC
ATTAGGTCACACTCGGGCGAGAAACCCTACAAGTGCAGCTTCGAGGGCTG
CCAGAAGGCGTACTCGAACTCCTCGGATCGTTTCAAGCACACGCGCACCC
ATTCGATGGAGAAGCCGTACATGTGCAAAGTGGCCGGCTGCCAGAAGCGC
TACACGGATCCGTCCTCGCTGCGAAAGCACGTCAAGACCTTCAAGCACAG
CATCCACCTGATCGCCAGC
MXO01074.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3850-PA | 1155 | sug-RA | 1..861 | 9..869 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sug-RA | 1343 | CG3850-RA | 71..933 | 7..869 | 4315 | 100 | Plus |
| sug-RB | 1468 | CG3850-RB | 228..1058 | 39..869 | 4155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12929782..12930234 | 417..869 | 2265 | 100 | Plus |
| 2R | 25286936 | 2R | 12928930..12929341 | 7..418 | 2060 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:29:12 has no hits.
MXO01074.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:03 Download gff for
MXO01074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sug-PA | 1..861 | 9..869 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:55 Download gff for
MXO01074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3850-PA | 1..861 | 9..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:28:56 Download gff for
MXO01074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3850-RA | 62..930 | 1..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:25 Download gff for
MXO01074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sug-RA | 65..933 | 1..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:13 Download gff for
MXO01074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sug-RA | 65..933 | 1..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:13 Download gff for
MXO01074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12928924..12929341 | 1..418 | 99 | -> | Plus |
| 2R | 12929784..12930234 | 419..869 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:25 Download gff for
MXO01074.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8816429..8816846 | 1..418 | 99 | -> | Plus |
| arm_2R | 8817289..8817739 | 419..869 | 100 | | Plus |
