MXO01077.5prime Sequence
862 bp (779 high quality bases) assembled on 2006-12-21
> MXO01077.5prime
CAGTCGACATGCGCGTCGAGCTTACCCCACAGACGTGCCGGGTCTGCCTG
GCGCAGAGTGAGCGACTGCAGCGCCTAGACGAGATCCGCGAGGAAGGCGA
GGAATCGCCGAACGAGATGTTGATTCAACTTTTGGGAGTCTCATACAGCA
ATCTGAACGACAGAGAACACATACCCGATGGCATCTGCAAGTCCTGCAAG
GTCGAACTCAACATGGCCTACCAGTTTCGCGAGAAGGCGCTGCGCAAGCA
GATGGAGATTGAGGAGTACTGCCGGGAACTGGGCTTGCTGGACGAATCAG
ATGTGATGATGATCAAGGAGGAGGACGGCTCGCAGCAGCAATGCGACGAG
GAGATGTACATCCTGGAGGAGACCACCACCGGGGAAGAGGAGCACCAGGA
AGAAAAGGGGCACGAGGAGTACTTGGAAGTGGACACCAGCGATCAGCAGG
AGTGCATTGGCGACACCATCGAGTACTTGGAGGACAACTACACCATCGAG
ATGAACTCCGATCAGACCGAGATCGTCCTGGAGTCTGAGAAGCAGTACGA
AGAGACACCATCGCAGCAGTTGGCGCTGCAGGAGGCGGCCAAGGCAAGCC
TGAAGGCGCGGCGCGGCCGGGTTCGTCGCGGATTAAACTCCCTAACAACA
TCGGACGGCACTGAGAAGGGTGGCTATATCTGCGACGTCTGCGGAAACTT
TTACGAAAAGCGCGGCCGGATGATGGAGCATCGCAGACGCCATGACGGCA
TCTGCCAATATGCATGCGAACTATGCGATGCCAAGTTCCAGGTGCGCGAG
CAACTGAGGAAGCACATGTACTCCCACACGGGCAGCAAACCCTATAAGTG
CAGCTTCTGCAG
MXO01077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10267-PA | 1167 | CG10267-RA | 1..854 | 9..862 | 4270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zif-RC | 1455 | CG10267-RC | 140..993 | 9..862 | 4270 | 100 | Plus |
| Zif-RB | 1394 | CG10267-RB | 79..932 | 9..862 | 4270 | 100 | Plus |
| Zif-RA | 1463 | CG10267-RA | 148..1001 | 9..862 | 4270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6457493..6458109 | 153..769 | 3085 | 100 | Plus |
| 3R | 32079331 | 3R | 6457287..6457430 | 9..152 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 6458167..6458259 | 770..862 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:52:06 has no hits.
MXO01077.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:06 Download gff for
MXO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10267-PA | 1..854 | 9..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:56 Download gff for
MXO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10267-PA | 1..854 | 9..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:00 Download gff for
MXO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10267-RA | 130..987 | 1..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:20 Download gff for
MXO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zif-RA | 144..1001 | 1..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:05 Download gff for
MXO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zif-RA | 144..1001 | 1..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:05 Download gff for
MXO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6458167..6458259 | 770..862 | 100 | | Plus |
| 3R | 6457283..6457430 | 1..152 | 97 | -> | Plus |
| 3R | 6457493..6458109 | 153..769 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:20 Download gff for
MXO01077.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2283889..2283981 | 770..862 | 100 | | Plus |
| arm_3R | 2283005..2283152 | 1..152 | 97 | -> | Plus |
| arm_3R | 2283215..2283831 | 153..769 | 100 | -> | Plus |
