MXO01079.5prime Sequence
897 bp (825 high quality bases) assembled on 2006-12-21
> MXO01079.5prime
CAGTCGACATGTGCTTTAAAATCAAGAACAATTGCTATTTGAAATTGCAA
CATTCATTTACAACTGCATCACTTGTTGGCAGCAGCACGAAATCGCAGTG
TTCAAAGTTGCTAAACACTTGTAATAGCAGCAACTCCGGCGTCCACGCCA
ACAACTGCCGCGTGCACGGAAGCAACGAGCGGCTTGAGCCCGAACTTAAT
AAGCCAAAACTCGTGATAAAAGCACTGACATCGATTAATTGGAGCATTTT
TAAACCTAATTCACTTTTTATATATGAAATGAATACACGCCGTCGGTCCA
TAGCTCCACCACCGAACGTTTACGCCATCAATGCCAAAATATGTCATTTG
GTGAAACTACATCCTTGTCTTTACGATCGTCACGATGACAACTACTTGCG
GAAATCGACTGTGAAAAATGCGTGGAAGGAAATATCCAATGAGATGCGAA
ATTCGGTTAAAAGCTGCAAGGAACGTTGGCGCAACATTCGCTCCAGCTAT
GCCCGCTCAATAAAGTTGCATCACGGTGCGAATACGTACTATCTTAACAG
CGAGCTGAAGTTCCTGCAAAAGCACATCACTCCCGGAGTGCCCGTTCCGC
TCAGAGGTCGTAGGTCAAGACCCAAGGGACAGGAGGAGCACGACGAAGGG
GATCCCGAAACTCCCGTAGAGGCAATCCTCGAGATGGTGCACTCCCCGAG
CTTTCTGAATTCGGAGCATGCGCAGAGCCGTCACAGCACCGACCCTGCAT
CGGCGACGGACGTTGAGGCAACACAATTTAATAATGAACCATCATCAATC
ATGGATTTCGAGGACACGGTCCCGGCAGACATGCGCACAGAGAGCGACAG
CAGTGAGAAGGAGGCCAAGACATCCACCCGCTGTATTGAAACAATGC
MXO01079.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-PA | 1179 | CG3919-RA | 1..882 | 9..890 | 4360 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3919-RB | 1358 | CG3919-RB | 20..909 | 8..897 | 4390 | 99.6 | Plus |
CG3919-RC | 1406 | CG3919-RC | 20..881 | 8..869 | 4295 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14411495..14411811 | 452..768 | 1570 | 99.7 | Plus |
3L | 28110227 | 3L | 14410645..14410901 | 8..264 | 1285 | 100 | Plus |
3L | 28110227 | 3L | 14411081..14411272 | 265..456 | 960 | 100 | Plus |
3L | 28110227 | 3L | 14412033..14412136 | 766..869 | 505 | 99 | Plus |
Blast to na_te.dros performed 2014-11-28 20:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rover | 7318 | rover ROVER 7318bp | 6822..6909 | 9..91 | 131 | 66.3 | Plus |
MXO01079.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:10 Download gff for
MXO01079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-PA | 1..889 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:57 Download gff for
MXO01079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-PA | 1..889 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:04 Download gff for
MXO01079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RA | 12..909 | 1..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:24 Download gff for
MXO01079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 12..909 | 1..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:53 Download gff for
MXO01079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3919-RB | 12..909 | 1..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:53 Download gff for
MXO01079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14410637..14410901 | 1..264 | 98 | -> | Plus |
3L | 14411081..14411272 | 265..456 | 100 | -> | Plus |
3L | 14411500..14411810 | 457..767 | 100 | -> | Plus |
3L | 14412035..14412136 | 768..869 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:24 Download gff for
MXO01079.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14403737..14404001 | 1..264 | 98 | -> | Plus |
arm_3L | 14404181..14404372 | 265..456 | 100 | -> | Plus |
arm_3L | 14404600..14404910 | 457..767 | 100 | -> | Plus |
arm_3L | 14405135..14405236 | 768..869 | 99 | -> | Plus |