MXO01080.5prime Sequence
913 bp (843 high quality bases) assembled on 2006-12-21
> MXO01080.5prime
CAGTCGACATGGTTCGCGGAGCTCTCCGAGGTGGCCGCCCCATGCGCGGC
GGCATACGTCCGCCGTTCAAAAAGACATTCGTGCCGCGCCACCCCTTCGA
TCTGACCCTCGCGGAGGTCTTCTTTCCCAAAGTTCCATCCGCCGGCGCCG
TTGACGATTCTGCTTTGACTGCGGCGCTGCTGAAGCGTAACCAGGACCTG
AGTCCCACTCCCAGCGAGCAGACGGCTATTGGCAATCTAGTGACCAAGGT
GCAGGCTGTTCTCGACAATCTGGTGGTTGCACCCGGGGATCTGACAACTT
GTCAACTGGAGGAAGTGCGTCAGGTTGGCTCCTTCAAGAAGGGCACCATA
CTGACGGGCAACAATGTAGCCGATGTGGTGGTTATCCTCAAAACCCTGCC
CACCAAGGAGGCCGTCGATGCGCTGGCCAAAAAAGTGGAGGCCGACCTGA
AGGCCAGCATGAAGACTGAAGTTCTGACCAAGGGCGATCAGCACACCGTA
CAGATCCATGAGCGGGGCTTCGACATCGCCAACGTGCATGCCAAGGTGCG
CATTCTGATCGCCACCTTGCCGCAGAATCTTCGCAAGCTGGAGCCTGAGA
TCCATTTGGATCACAAACTGATGCAGAGCCATCTGGCTGCCATTCGGCAC
ACGCGCTGGTTTGAGGAAAATGCCCACCACTCCTCGATAAAGGTGCTCAT
TCGCATTCTCAAGGATCTCACTAGGCGTTTCGACGCTTTTTCGCCGCTGT
CGGCCTGGATGCTGGACCTGATCGCCCATTTGGCCATCATGAACAACCCG
TCGCGACAGGCACTGCCCATCAACCTGGCCTTCCGTCGCGTCTTTCAGCT
ACTCTCCGCCGGGCTCTTCCTGCCGGGCTCGGCCGGCATCACGGATCCCA
CCGAGCCGGGGAC
MXO01080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5641-PA | 1191 | CG5641-RA | 1..902 | 9..910 | 4510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5641-RA | 1365 | CG5641-RA | 82..983 | 9..910 | 4510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12428177..12428784 | 910..303 | 3040 | 100 | Minus |
| 3R | 32079331 | 3R | 12429036..12429201 | 174..9 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 12428846..12428975 | 302..173 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:08:59 has no hits.
MXO01080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:12 Download gff for
MXO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-PA | 1..904 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:57 Download gff for
MXO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-PA | 1..904 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:06 Download gff for
MXO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 73..983 | 1..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:35 Download gff for
MXO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 75..985 | 1..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:10 Download gff for
MXO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5641-RA | 75..985 | 1..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:10 Download gff for
MXO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12428175..12428784 | 303..913 | 99 | <- | Minus |
| 3R | 12428846..12428974 | 174..302 | 100 | <- | Minus |
| 3R | 12429037..12429208 | 1..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:35 Download gff for
MXO01080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8253897..8254506 | 303..913 | 99 | <- | Minus |
| arm_3R | 8254568..8254696 | 174..302 | 100 | <- | Minus |
| arm_3R | 8254759..8254930 | 1..173 | 97 | | Minus |
