MXO01081.5prime Sequence
876 bp (824 high quality bases) assembled on 2006-12-21
> MXO01081.5prime
CAGTCGACATGAGCGATGTGCTAAAGAGCTCCCAGGAGCGATCCCGCAAG
CGTCGTTTGCTTTTAGCGCAAACTTTGGGCTTGTCGAGCGTCGACGATCT
GAAAAAGGCTTTGGGTAATGCCGAAGACATTAACAGTAGTCGCCAGCTGA
ATTCCGGTGGGCAACGCGAGGAGGAGGATGGTGGCGCCTCTTCCTCCAAG
AAAACCCCCAATGAAATCATCTATAGGGACTCCTCGACCTTCCTGAAGGG
AACCCAGTCTTCCAATCCGCACAATGACTACTGCCAGCACTTTGTGGACA
CCGGTCAGCGTCCCCAGAACTTCATCCGTGATGTCGGCCTAGCTGACCGC
TTCGAGGAGTATCCCAAGTTGAGGGAACTGATCAAACTGAAGGACAAACT
CATCCAAGACACCGCATCCGCACCTATGTACTTAAAGGCGGATCTGAAAT
CGCTAGATGTCAAGACGCTGGGCGCCAAGTTTGATGTTATTTTGATTGAG
CCGCCGCTAGAGGAATATGCCAGGGCAGCACCTTCTGTAGCCACTGTAGG
TGGGGCACCGCGGGTTTTCTGGAACTGGGATGATATACTTAATTTGGATG
TGGGCGAGATAGCTGCTCATCGTTCGTTTGTATTCCTTTGGTGCGGATCC
TCGGAGGGCTTGGACATGGGCCGCAACTGCCTGAAGAAGTGGGGATTCCG
GAGGTGCGAAGACATATGTTGGATACGGACCAACATTAACAAGCCCGGGC
ACTCCAAGCAACTTGAACCGAAAGCGGTCTTTCAACGCACCAAGGAACAC
TGCCTGATGGGAATCAAAGGAACTGTTCGCCGCTCCACTGATGGCGATTT
TATCCATGCCAACGTGGACATTGATT
MXO01081.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7818-PA | 1194 | CG7818-RA | 1..868 | 9..876 | 4340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7818-RA | 1407 | CG7818-RA | 118..985 | 9..876 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8308682..8309198 | 75..591 | 2585 | 100 | Plus |
| 2L | 23513712 | 2L | 8309255..8309539 | 592..876 | 1425 | 100 | Plus |
| 2L | 23513712 | 2L | 8308544..8308609 | 9..74 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:36 has no hits.
MXO01081.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:13 Download gff for
MXO01081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7818-PA | 1..868 | 9..876 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:58 Download gff for
MXO01081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7818-PA | 1..868 | 9..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:08 Download gff for
MXO01081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7818-RA | 105..972 | 9..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:59 Download gff for
MXO01081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7818-RA | 118..985 | 9..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:06 Download gff for
MXO01081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7818-RA | 118..985 | 9..876 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:06 Download gff for
MXO01081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8308544..8308609 | 9..74 | 100 | -> | Plus |
| 2L | 8308682..8309198 | 75..591 | 100 | -> | Plus |
| 2L | 8309255..8309539 | 592..876 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:59 Download gff for
MXO01081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8308544..8308609 | 9..74 | 100 | -> | Plus |
| arm_2L | 8308682..8309198 | 75..591 | 100 | -> | Plus |
| arm_2L | 8309255..8309539 | 592..876 | 100 | | Plus |
