MXO01083.5prime Sequence
824 bp (823 high quality bases) assembled on 2006-12-21
> MXO01083.5prime
CAGTCGACATGGAAAACCATTTCAGCGCCACCAGTCGCCCCTCAGCCACG
CCCAGAATGTGCACCACCGCCTCTGCCGTCGGTGCTGCCGCCAGCGCCGC
CGCCGCCGCCGGCAACAACAATAACAACAGCAATAGCAGCAGCAACAACA
ACGCAACAACCGGCAACAATTTAAGTGTTAGCACTGCAGCCGGAGGAGCC
ACAAATGCCGCAGCAACGGCACAACCCATCCAAGTGATACCAATGCCCAT
GCTGCCCACCGGAGCGGCGCAAATCATAATTGGCCAGCAGCCACAGGGTC
AGGCGACGGCGACGGGTCTGCAGCCACAATTGATACCGCTGCAGGCCAAC
CAGATTATGCTGCAGGCTGCGCAGCAGCAGCCACAGATGCAGGTGATGCA
GCTGCCCGATGGCCAGACTATATTCTATCAGACGCCCACCATTGCCGCCT
TGGATCCGAATGCAGCGGCCAACGCCGCAGCTGCCATGGCAGCCCAGCCG
ACGCCGCACTACCTCAATATCAATGGGCAGCTGGTGCAGATCAATCCAGC
ACCGAGCGCTAATCAGGCGGCACCCACAGCTGGGCAACAGATTATAATGG
TGCCGCAGACAGCGATGGCAGCGGTGAATGCAGCGGCCGCCAATGCCGGA
GTAGGCGCCGGAGTGGGCACAGTGGTTACCCAACAACAACAGCAGCAGCA
TCAACAAGTACAATCCCAGACCCAAAACCAGCAGCAGCAGCAACAGCAGC
AGACGGTGGCGGCGGTGGCTGCCAGTGCTGCAGTCAATAATATAAGCGCC
GATGTCAGCACAAGTACAACTGGA
MXO01083.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3891-PA | 1200 | CG3891-RA | 1..816 | 9..824 | 4080 | 100 | Plus |
| CG6700-PA | 2625 | CG6700-RA | 493..519 | 681..707 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nf-YA-RA | 2055 | CG3891-RA | 219..1034 | 9..824 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9441077..9441892 | 824..9 | 4080 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:09:31 has no hits.
MXO01083.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:17 Download gff for
MXO01083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3891-PA | 1..815 | 9..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:59 Download gff for
MXO01083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3891-PA | 1..815 | 9..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:12 Download gff for
MXO01083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3891-RA | 199..1019 | 1..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:05 Download gff for
MXO01083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YA-RA | 213..1033 | 1..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:33 Download gff for
MXO01083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nf-YA-RA | 213..1033 | 1..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:33 Download gff for
MXO01083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9441078..9441898 | 1..823 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:05 Download gff for
MXO01083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9434178..9434998 | 1..823 | 99 | | Minus |
