MXO01084.5prime Sequence
899 bp (825 high quality bases) assembled on 2006-12-21
> MXO01084.5prime
CAGTCGACATGCCGCCTGGAACGCAAATTGCCAGCGACAGCGATATGGAG
ACCGCTCTGGAGGAGTTCAAGCAGCGCCAGGGACGCCGCAACAGCATCGG
CTCGGCCAAGTACGCGTGCAGCATGCCCAAATGCGAGGCCACATTCAAGC
GGCTGGACCAATTGGATCGCCATGAGTATCATCACACAGGGATTAAGAAG
CACGCCTGCTCGTACGAGGGTTGCGACAAGACGTACTCGATTGTGACGCA
CTTAAAGAGGCATCTGCGCAGCACCCACGAGCGTCCGGAGTCGGCGGCCA
AGAAGACGGTGAAGTGCGCGCTGGAGGAGTGCAGCAAGATGTTCATCTCG
GTTAGCAACATGACCCGCCACATGCGCGAAACCCACGAGAGCCCAAAGGT
CTATCCGTGCAGCCAGTGCAGTGCCAAATTCTCGCAAAAGCTCAAGCTGA
AGCGCCACGAGATCAGGGAGCACACGCTGGAGTATCCGTACAGCTGCTCG
AAGTGCTCGCGCGGCTTCTACCAGCAGTGGCAGTGCCAGAGTCACGAGCC
CAGCTGCAAGCTGTACGAGTGTCCCGGCTGCCCGCTGCAGTTCGACAAAT
GGACGTTGTATACGAAGCATTGTCGCGACTCGTTGCACGGCAAGAATCGC
CATAAGTGCGACCGCTGCGATAGTGCCTTCGACAAGCCGAGCGAACTGAA
GCGTCACCTCGAGGTGAAGCACAAGGAGGCGGCGCAGACGGATGAGTGCG
CCACCTCCTTCACCTGCAACGAGGAGGGATGCGGCAAGAGTTACTCGTAC
CTCAGGAATCTACGCCAGCACATGCTCACCGCCCACTCGGGCAGGCGTTT
CGAGTGCCAGGCCTTGAACTGCGGGCGCTGTTTCAGCAGTGCGCAGAAT
MXO01084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9609-PA | 1212 | CG9609-RA | 1..891 | 9..899 | 4405 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9609-RA | 1834 | CG9609-RA | 259..1149 | 9..899 | 4425 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16785800..16786504 | 899..195 | 3495 | 99.7 | Minus |
| X | 23542271 | X | 16786565..16786750 | 194..9 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:52:26 has no hits.
MXO01084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:19 Download gff for
MXO01084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-PA | 1..891 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:59 Download gff for
MXO01084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-PA | 1..891 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:14 Download gff for
MXO01084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 229..1119 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:34 Download gff for
MXO01084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 259..1149 | 9..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:18 Download gff for
MXO01084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9609-RA | 259..1149 | 9..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:18 Download gff for
MXO01084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16785800..16786504 | 195..899 | 99 | <- | Minus |
| X | 16786565..16786750 | 9..194 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:34 Download gff for
MXO01084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16679833..16680537 | 195..899 | 99 | <- | Minus |
| arm_X | 16680598..16680783 | 9..194 | 100 | | Minus |
