MXO01085.5prime Sequence
881 bp (828 high quality bases) assembled on 2006-12-21
> MXO01085.5prime
CAGTCGACATGATGTGGTGCAAAACAGTGATAGTGTTGCTGGCGACAGTC
GGCTTTATTAGTGCCGAGGTTTATCTGAAGGAGAATTTCGACAACGAAAA
CTGGGAGGATACGTGGATCTACAGCAAACATCCTGGCAAGGAGTTCGGAA
AATTCGTCCTCACCCCCGGTACCTTCTACAACGATGCTGAGGCCGACAAA
GGCATTCAGACCTCTCAGGATGCTCGATTCTACGCGGCCAGCCGCAAGTT
TGATGGCTTCTCCAACGAGGACAAGCCCCTCGTGGTGCAGTTCTCCGTGA
AGCACGAGCAGAATATCGACTGCGGCGGCGGCTATGTGAAGCTGTTCGAC
TGCTCCCTCGACCAGACCGACATGCACGGCGAGTCGCCGTACGAGATCAT
GTTCGGCCCGGACATCTGCGGACCCGGCACCAAGAAGGTCCATGTGATCT
TCAGCTACAAGGGCAAGAACCACCTAATCAGCAAAGACATCCGCTGCAAA
GATGACGTGTACACCCACTTCTACACGCTGATTGTCAGACCCGACAACAC
GTACGAGGTGCTCATCGACAACGAGAAGGTGGAGTCTGGCAACCTGGAGG
ACGACTGGGACTTCCTGGCCCCCAAGAAGATCAAGGATCCCACCGCCACC
AAGCCCGAAGACTGGGACGATAGGGCCACCATTCCCGATCCCGATGACAA
GAAGCCCGAGGACTGGGACAAACCAGAGCACATTCCCGACCCAGATGCCA
CAAAGCCTGAGGATTGGGACGATGAGATGGACGGCGAGTGGGAGCCACCG
ATGATCGACAACCCTGAGTTCAAGGGCGAGTGGCAGCCAAAGCAGCTGGA
CAACCCCAACTACTAGGGCGCCTGGGAGCAT
MXO01085.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9429-PA | 1221 | Crc-RA | 1..873 | 9..881 | 4340 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Crc-RB | 1677 | CG9429-RB | 85..959 | 7..881 | 4360 | 99.9 | Plus |
| Crc-RA | 1430 | CG9429-RA | 85..959 | 7..881 | 4360 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9629707..9630182 | 675..200 | 2380 | 100 | Minus |
| 3R | 32079331 | 3R | 9629409..9629616 | 881..674 | 1025 | 99.5 | Minus |
| 3R | 32079331 | 3R | 9630448..9630554 | 202..96 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 9630678..9630767 | 96..7 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:37:15 has no hits.
MXO01085.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:20 Download gff for
MXO01085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-PA | 1..873 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:59 Download gff for
MXO01085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9429-PA | 1..873 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:16 Download gff for
MXO01085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9429-RA | 114..993 | 1..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:31 Download gff for
MXO01085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 80..959 | 1..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:45 Download gff for
MXO01085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Crc-RA | 80..959 | 1..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:45 Download gff for
MXO01085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9629409..9629615 | 675..881 | 99 | <- | Minus |
| 3R | 9629708..9630180 | 202..674 | 100 | <- | Minus |
| 3R | 9630449..9630553 | 97..201 | 100 | <- | Minus |
| 3R | 9630678..9630772 | 1..96 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:31 Download gff for
MXO01085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5455131..5455337 | 675..881 | 99 | <- | Minus |
| arm_3R | 5455430..5455902 | 202..674 | 100 | <- | Minus |
| arm_3R | 5456171..5456275 | 97..201 | 100 | <- | Minus |
| arm_3R | 5456400..5456494 | 1..96 | 96 | | Minus |
