MXO01086.5prime Sequence
906 bp (879 high quality bases) assembled on 2006-12-21
> MXO01086.5prime
CAGTCGACATGGGCATATCGGAGGAAATCAAGCTGGAGGAACTACCGCAA
GAAGCCAAGCTAGCGCACCCGGATGCCGTAGTGCTGGTGGATCGTGCCCC
AGGATCGTCGGCCGCCTCCGCCGGCGCAGCGCTGACGGTTTCGATGTCGG
TCTCGGGCGGAGCGCCCAGTGGAGCAAGTGGGGCCAGTGGCGGCACCAAT
AGCCCCGTTTCGGATGGAAACAGCGACTGCGAAGCGGACGAGTACGCCCC
GAAGCGGAAGCAGCGGCGCTATCGCACAACCTTCACCAGCTTTCAGCTCG
AGGAGCTGGAGAAGGCATTCTCGCGGACCCATTATCCCGACGTGTTTACG
AGAGAGGAGCTGGCGATGAAAATTGGATTAACCGAGGCGCGCATTCAGGT
TTGGTTTCAAAATCGGCGCGCCAAGTGGCGCAAGCAGGAGAAGGTTGGCC
CCCAGTCGCATCCGTATAATCCCTACCTGCCCGGCGGCGCCGCCACCATG
CAGACGGTAGTTGGGGCCGCCCTACCGCCCAATCCCTTCACTCACCTGGG
CTTCCAGCTGCGCAAGCCCTTCGACGCCCAACATGCCGCGAACCTTGCCG
CCTTCCGCTACCCGCACCTCTCTGCGGCCCCCATGATTCCGTCGGGCTAC
TTTAACCAATTCCAGAGGGCTCCTCCCCATATGTTACCACATGGAATGGC
TGGTATGTACTCTCCCTCGAGCTCATTTCAATCCTTGCTGGCCAATATGA
CGGCCGTTCCGCGCGGGACTCCACTTGGAAAACCTCCTGCACTACTGGTG
GGATCTCCCGATCTGCATTCGCCCAACCACATGCTCGCCTCACCACCCAC
ATCGCCTGCCTCCGGGCACGCCTCCCAGCATCAACAACATCCAACCGCTC
ACCCCC
MXO01086.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3935-PA | 1227 | al-RA | 1..898 | 9..906 | 4490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
al-RA | 1806 | CG3935-RA | 411..1308 | 9..906 | 4490 | 100 | Plus |
Pph13-RA | 1880 | CG2819-RA | 575..717 | 301..443 | 265 | 79 | Plus |
CG34340-RF | 2989 | CG34340-RF | 736..916 | 254..434 | 260 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 384551..384894 | 9..352 | 1720 | 100 | Plus |
2L | 23513712 | 2L | 386305..386577 | 396..668 | 1365 | 100 | Plus |
2L | 23513712 | 2L | 386701..386941 | 666..906 | 1205 | 100 | Plus |
2L | 23513712 | 2L | 578181..578323 | 301..443 | 265 | 79 | Plus |
2L | 23513712 | 2L | 385699..385748 | 351..400 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:03:29 has no hits.
MXO01086.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-21 20:25:22 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:59 Download gff for
MXO01086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3935-PA | 1..898 | 9..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:19 Download gff for
MXO01086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3935-RA | 407..1304 | 9..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:28 Download gff for
MXO01086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
al-RA | 411..1308 | 9..906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:30 Download gff for
MXO01086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
al-RA | 411..1308 | 9..906 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:30 Download gff for
MXO01086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 384551..384894 | 9..352 | 100 | -> | Plus |
2L | 385701..385746 | 353..398 | 100 | -> | Plus |
2L | 386308..386576 | 399..667 | 100 | -> | Plus |
2L | 386703..386941 | 668..906 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:28 Download gff for
MXO01086.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 384551..384894 | 9..352 | 100 | -> | Plus |
arm_2L | 385701..385746 | 353..398 | 100 | -> | Plus |
arm_2L | 386308..386576 | 399..667 | 100 | -> | Plus |
arm_2L | 386703..386941 | 668..906 | 100 | | Plus |