Clone MXO01086 Report

Search the DGRC for MXO01086

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:86
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptal-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01086.5prime Sequence

906 bp (879 high quality bases) assembled on 2006-12-21

> MXO01086.5prime
CAGTCGACATGGGCATATCGGAGGAAATCAAGCTGGAGGAACTACCGCAA
GAAGCCAAGCTAGCGCACCCGGATGCCGTAGTGCTGGTGGATCGTGCCCC
AGGATCGTCGGCCGCCTCCGCCGGCGCAGCGCTGACGGTTTCGATGTCGG
TCTCGGGCGGAGCGCCCAGTGGAGCAAGTGGGGCCAGTGGCGGCACCAAT
AGCCCCGTTTCGGATGGAAACAGCGACTGCGAAGCGGACGAGTACGCCCC
GAAGCGGAAGCAGCGGCGCTATCGCACAACCTTCACCAGCTTTCAGCTCG
AGGAGCTGGAGAAGGCATTCTCGCGGACCCATTATCCCGACGTGTTTACG
AGAGAGGAGCTGGCGATGAAAATTGGATTAACCGAGGCGCGCATTCAGGT
TTGGTTTCAAAATCGGCGCGCCAAGTGGCGCAAGCAGGAGAAGGTTGGCC
CCCAGTCGCATCCGTATAATCCCTACCTGCCCGGCGGCGCCGCCACCATG
CAGACGGTAGTTGGGGCCGCCCTACCGCCCAATCCCTTCACTCACCTGGG
CTTCCAGCTGCGCAAGCCCTTCGACGCCCAACATGCCGCGAACCTTGCCG
CCTTCCGCTACCCGCACCTCTCTGCGGCCCCCATGATTCCGTCGGGCTAC
TTTAACCAATTCCAGAGGGCTCCTCCCCATATGTTACCACATGGAATGGC
TGGTATGTACTCTCCCTCGAGCTCATTTCAATCCTTGCTGGCCAATATGA
CGGCCGTTCCGCGCGGGACTCCACTTGGAAAACCTCCTGCACTACTGGTG
GGATCTCCCGATCTGCATTCGCCCAACCACATGCTCGCCTCACCACCCAC
ATCGCCTGCCTCCGGGCACGCCTCCCAGCATCAACAACATCCAACCGCTC
ACCCCC

MXO01086.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3935-PA 1227 al-RA 1..898 9..906 4490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
al-RA 1806 CG3935-RA 411..1308 9..906 4490 100 Plus
Pph13-RA 1880 CG2819-RA 575..717 301..443 265 79 Plus
CG34340-RF 2989 CG34340-RF 736..916 254..434 260 76.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 384551..384894 9..352 1720 100 Plus
2L 23513712 2L 386305..386577 396..668 1365 100 Plus
2L 23513712 2L 386701..386941 666..906 1205 100 Plus
2L 23513712 2L 578181..578323 301..443 265 79 Plus
2L 23513712 2L 385699..385748 351..400 250 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:03:29 has no hits.

MXO01086.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed on 2007-01-21 20:25:22 has no hits.
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:14:59 Download gff for MXO01086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3935-PA 1..898 9..906 100   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:19 Download gff for MXO01086.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3935-RA 407..1304 9..906 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:28 Download gff for MXO01086.5prime
Subject Subject Range Query Range Percent Splice Strand
al-RA 411..1308 9..906 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:30 Download gff for MXO01086.5prime
Subject Subject Range Query Range Percent Splice Strand
al-RA 411..1308 9..906 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:30 Download gff for MXO01086.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 384551..384894 9..352 100 -> Plus
2L 385701..385746 353..398 100 -> Plus
2L 386308..386576 399..667 100 -> Plus
2L 386703..386941 668..906 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:28 Download gff for MXO01086.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 384551..384894 9..352 100 -> Plus
arm_2L 385701..385746 353..398 100 -> Plus
arm_2L 386308..386576 399..667 100 -> Plus
arm_2L 386703..386941 668..906 100   Plus