MXO01089.5prime Sequence
862 bp (681 high quality bases) assembled on 2006-12-21
> MXO01089.5prime
CAGTCGACATGACCACGCTGTGCCGCACCTGTGGCCGGGAGGCGGAGCAC
GCCAAGTCACTTTTCGATAAGGAGGCCAGAGATGTCCTGAGCAACATCCT
CAAGCTGACGGGCTTTTGGTTGAGGAACCAGCCAGGTGTGCCAACGAGGA
TCTGCTTATCCTGCTTGCTGGATCTGAACGATGCCATCGCATTCCGGGAG
CGCTGCATCAGGACCAATTCGTCTTGGTTCGAAAAGCAGGGCAAACAAGA
GGATTCGGACACTGAGACTGCAAGGGAAGGCGGGAATAACAGGTTAGAAA
GTAGGGTGGATGTTATGCCCATTAGTATTGCACAGCCGCAAAGGAGAAGG
ATTCTACCACAACGCAGCAAGAAAGTGGATGGAGTGCCTCTTAAGACAGT
AGAAACCCCAATTTACCCTTTAGTTGTCCCGGAAATACCGCCTGCCGATC
TCGTCGATCCTCTCCGGTGCGAGGATCCTATTCAGGTGAAGAGCGAGCCT
CAGCTTTCATCTGATTATCCAGTGGAGTCCATGAATCACGAAGAGCCAGC
ATCCGAAATGCCCCAAGTCATGAAGGAAGAGCCCAGAACACTACAAGTCA
TCGGGGAAGTACAGAAAAACCGAAGAAAACCGAGGAGCAAAGGGTGCTTA
GAGGAGTGTCCTGGCAAGGACATGGCTAAAATAGAGAATATTGACTCAAC
TACCAATAAGACCAAAGAGGAGAAGTATGCCACACGAAACAAATGGCGAG
CTGCCAAAAGAGCCTATGCACTGGAGCACCGACTATATTTCTGCGACCAA
TGCGGCAAAACTCTTAGCGAGAAGGGCGACTTCTATGTGCACCTCAGACG
GCACCATGGCGC
MXO01089.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-PA | 1266 | CG17806-RA | 1..846 | 9..854 | 4080 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17806-RA | 1613 | CG17806-RA | 95..940 | 9..854 | 4140 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17802271..17803006 | 854..119 | 3605 | 99.3 | Minus |
| 3R | 32079331 | 3R | 17803056..17803166 | 119..9 | 540 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:29:43 has no hits.
MXO01089.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:24 Download gff for
MXO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-PA | 1..852 | 9..862 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:00 Download gff for
MXO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-PA | 1..852 | 9..862 | 98 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:21 Download gff for
MXO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 61..915 | 2..862 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:46 Download gff for
MXO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 92..946 | 2..862 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:26 Download gff for
MXO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17806-RA | 92..946 | 2..862 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:26 Download gff for
MXO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17802263..17803005 | 120..862 | 98 | <- | Minus |
| 3R | 17803056..17803169 | 2..119 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:46 Download gff for
MXO01089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13627985..13628727 | 120..862 | 98 | <- | Minus |
| arm_3R | 13628778..13628891 | 2..119 | 95 | | Minus |
