MXO01090.5prime Sequence
879 bp (771 high quality bases) assembled on 2006-12-21
> MXO01090.5prime
CAGTCGACATGATCTCGCCGGAACAAGAGGAGGTCAACATGGTCCTGGAT
CGCCATGTACGGCAGAACATAAAGGACCTGATGCACGAGGCTCATGTCCA
TGCGAGCCTGCTGAACAACGAGGGACGTGACCGTTTCCACTCGGACTCCA
GTTTGGACCAGGATTCCCTTCACGCCGTCGTTGGGAATGATCTGAGCACC
GAACAAGGCGCCAACCAGGTGCAAAACTACCACGACATGATGGTGGACAG
TGAACACCACGTCGACATTAATGGGTCGCTGCGCAAACGTCGCGGAAATC
TGCCCAAGTCATCTGTAAAGATTTTAAAGCGTTGGCTTTATGAGCACCGC
TATAACGCCTATCCGAGCGATGCGGAGAAGTTCACCCTGTCCCAGGAGGC
CAATCTGACGGTGCTCCAAGTGTGCAACTGGTTCATCAATGCCCGTCGCC
GCATTCTACCCGAGATGATCAGGCGCGAGGGCAACGATCCTCTGCACTTC
ACCATATCGCGACGTGGCAAAAAGGTTAGCCCCAACTGTTCGAGATCAAG
TGCGTTGGGCGCAAACTTGACTGGGCCGAATCCCGCACACGGAAGTCCTG
CTTCCGAAGTGGTCGTTGGCGCTACAGAGGAGGTGGATGGCGCCGGTGAG
ATTCACGAGGGCATCGCCAATGTGCTGACCAACTTTGAACAGTATGTGCA
GGGCCCCAACGGACAAATGGTCAAGATGGAGCCGGAGTACGAGGACAGTG
TCATCTACAGGTCCGAAGGCGAAGAGAGTGCACAGGGATACGAGTCCTGT
GGGCCGAACAGCGAGGAGGAAGTACGCTTCGAGACCTCCCATGATTGGCA
GAGCGTTATAAAAACTGTATTTGGGACTG
MXO01090.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8821-PA | 1275 | vis-RA | 1..871 | 9..879 | 4355 | 100 | Plus |
| CG8819-PA | 1281 | achi-RA | 192..872 | 194..874 | 3205 | 98.8 | Plus |
| CG8819-PC | 1668 | achi-RC | 192..758 | 194..760 | 2635 | 98.5 | Plus |
| CG8821-PB | 1575 | vis-RB | 1..518 | 9..526 | 2590 | 100 | Plus |
| CG8821-PB | 1575 | vis-RB | 516..665 | 611..760 | 750 | 100 | Plus |
| CG8821-PB | 1575 | vis-RB | 1051..1171 | 759..879 | 605 | 100 | Plus |
| CG8819-PC | 1668 | achi-RC | 1144..1259 | 759..874 | 580 | 100 | Plus |
| CG8819-PC | 1668 | achi-RC | 1..167 | 9..175 | 510 | 92.2 | Plus |
| CG8819-PA | 1281 | achi-RA | 1..167 | 9..175 | 510 | 92.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vis-RA | 1741 | CG8821-RA | 94..964 | 9..879 | 4355 | 100 | Plus |
| achi-RA | 2122 | CG8819-RA | 305..1181 | 9..879 | 3875 | 96.4 | Plus |
| achi-RD | 2277 | CG8819-RD | 73..830 | 9..760 | 3295 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12509777..12510267 | 613..123 | 2455 | 100 | Minus |
| 2R | 25286936 | 2R | 12513566..12514062 | 613..123 | 2090 | 95.2 | Minus |
| 2R | 25286936 | 2R | 12509569..12509720 | 762..611 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 12513358..12513509 | 762..611 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 12510324..12510439 | 124..9 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 12508893..12508997 | 862..758 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 12512682..12512786 | 862..758 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 12514132..12514244 | 121..9 | 445 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:59:19 has no hits.
MXO01090.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:26 Download gff for
MXO01090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vis-PA | 1..871 | 9..879 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:00 Download gff for
MXO01090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8821-PA | 1..871 | 9..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:23 Download gff for
MXO01090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8821-RA | 363..1238 | 1..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:05 Download gff for
MXO01090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vis-RA | 172..1047 | 1..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:36 Download gff for
MXO01090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vis-RA | 89..964 | 1..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:36 Download gff for
MXO01090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12509571..12509719 | 612..760 | 100 | <- | Minus |
| 2R | 12508893..12508994 | 761..862 | 100 | <- | Minus |
| 2R | 12508817..12508833 | 863..879 | 100 | <- | Minus |
| 2R | 12509779..12510266 | 124..611 | 100 | <- | Minus |
| 2R | 12510325..12510444 | 1..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:05 Download gff for
MXO01090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8396322..8396338 | 863..879 | 100 | <- | Minus |
| arm_2R | 8396398..8396499 | 761..862 | 100 | <- | Minus |
| arm_2R | 8397076..8397224 | 612..760 | 100 | <- | Minus |
| arm_2R | 8397284..8397771 | 124..611 | 100 | <- | Minus |
| arm_2R | 8397830..8397949 | 1..123 | 96 | | Minus |
