Clone MXO01091 Report

Search the DGRC for MXO01091

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:91
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptDoc3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01091.5prime Sequence

682 bp (351 high quality bases) assembled on 2006-12-21

> MXO01091.5prime
CAGTCGACATGTTGACCTTGCCCAACATCGCCGATCTGCGATTGCAGCAG
CAGATCGCCCAGGAGATATACCGCCAGCAGATTATGCAACGTTTACCCGA
TCCCCTATGCGGCCTGCTACCCAACTTTGCCGGACACTTTATGCCACCGC
CGCCACCGCCGCAACCCACTTTGCCCGGCGATGTGGAGGCCAAGCTGGAG
AATAACGAACTCTGGCAGCAGTTCCACAGCATCGGCACCGAGATGATCAT
CACCAAGTGCGGCAGACGCATGTTCCCTTCGATGCGGGTTTCCCTCAGTG
GACTGGAGGAGGAGGCCAGCTATTGCGTGCTCCTCGAGATGGTGCCCATT
GGCGATTGTCGCTATAAGTTCTCTGGATCCCAGTGGGTGCCGGCCGGAGG
AGCCGAGCCCCAGAGCCCGCAGCGCATGGATCTGCATCCGGAGAGTCCAG
CCACGGGAAAACACTGGCAATCCCAGGCTCTGCTCTTCAGCAAAGTGAAA
TTGACGAATAATACGCTGGATAACAATGGTCATATCGTCTTGGCCAGCAT
GCACAAGTATCAACCGCGTCTGCACGTCATACGAACCTCTGATCTCGGCC
AGATTCCCTGGGCCCCCCAACAGGGCTTTATCTTTCCGGAGACGGAGTTT
ATAGCCGTAACAGCTTATCAGAATGACCGCAT

MXO01091.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5093-PA 1275 Doc3-RA 1..674 9..682 3295 99.5 Plus
CG5133-PA 1176 Doc1-RA 223..440 231..448 715 93.1 Plus
CG5187-PB 1410 Doc2-RB 303..392 320..409 250 91.1 Plus
CG5187-PA 1410 Doc2-RA 303..392 320..409 250 91.1 Plus
CG5187-PB 1410 Doc2-RB 484..578 501..595 225 89.4 Plus
CG5187-PA 1410 Doc2-RA 484..578 501..595 225 89.4 Plus
CG5187-PB 1410 Doc2-RB 226..269 243..286 145 93.1 Plus
CG5187-PA 1410 Doc2-RA 226..269 243..286 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-RA 1671 CG5093-RA 123..796 9..682 3325 99.6 Plus
Doc1-RB 1339 CG5133-RB 138..652 165..682 1290 83.4 Plus
Doc1-RA 1526 CG5133-RA 325..839 165..682 1290 83.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9005772..9006042 263..533 1340 99.6 Plus
3L 28110227 3L 9043385..9043642 263..520 855 88.8 Plus
3L 28110227 3L 9005470..9005636 99..265 835 100 Plus
3L 28110227 3L 9006159..9006296 534..671 660 98.6 Plus
3L 28110227 3L 9014716..9014937 525..304 480 81.1 Minus
3L 28110227 3L 9005318..9005408 9..99 455 100 Plus
3L 28110227 3L 9014492..9014626 671..537 375 85.2 Minus
3L 28110227 3L 9042116..9042196 183..263 240 86.4 Plus
3L 28110227 3L 9043724..9043861 534..671 195 76.1 Plus
Blast to na_te.dros performed on 2014-11-28 19:46:35 has no hits.

MXO01091.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:27 Download gff for MXO01091.5prime
Subject Subject Range Query Range Percent Splice Strand
Doc3-PA 1..674 9..682 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:00 Download gff for MXO01091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5093-PA 1..674 9..682 99   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:25 Download gff for MXO01091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5093-RA 121..794 9..682 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:48 Download gff for MXO01091.5prime
Subject Subject Range Query Range Percent Splice Strand
Doc3-RA 123..796 9..682 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:55 Download gff for MXO01091.5prime
Subject Subject Range Query Range Percent Splice Strand
Doc3-RA 123..796 9..682 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:55 Download gff for MXO01091.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9005775..9006042 266..533 99 -> Plus
3L 9006159..9006299 534..675 97   Plus
3L 9005318..9005408 9..99 100 -> Plus
3L 9005471..9005636 100..265 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:48 Download gff for MXO01091.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8998418..8998508 9..99 100 -> Plus
arm_3L 8998571..8998736 100..265 100 -> Plus
arm_3L 8998875..8999142 266..533 99 -> Plus
arm_3L 8999259..8999399 534..675 97   Plus