MXO01091.5prime Sequence
682 bp (351 high quality bases) assembled on 2006-12-21
> MXO01091.5prime
CAGTCGACATGTTGACCTTGCCCAACATCGCCGATCTGCGATTGCAGCAG
CAGATCGCCCAGGAGATATACCGCCAGCAGATTATGCAACGTTTACCCGA
TCCCCTATGCGGCCTGCTACCCAACTTTGCCGGACACTTTATGCCACCGC
CGCCACCGCCGCAACCCACTTTGCCCGGCGATGTGGAGGCCAAGCTGGAG
AATAACGAACTCTGGCAGCAGTTCCACAGCATCGGCACCGAGATGATCAT
CACCAAGTGCGGCAGACGCATGTTCCCTTCGATGCGGGTTTCCCTCAGTG
GACTGGAGGAGGAGGCCAGCTATTGCGTGCTCCTCGAGATGGTGCCCATT
GGCGATTGTCGCTATAAGTTCTCTGGATCCCAGTGGGTGCCGGCCGGAGG
AGCCGAGCCCCAGAGCCCGCAGCGCATGGATCTGCATCCGGAGAGTCCAG
CCACGGGAAAACACTGGCAATCCCAGGCTCTGCTCTTCAGCAAAGTGAAA
TTGACGAATAATACGCTGGATAACAATGGTCATATCGTCTTGGCCAGCAT
GCACAAGTATCAACCGCGTCTGCACGTCATACGAACCTCTGATCTCGGCC
AGATTCCCTGGGCCCCCCAACAGGGCTTTATCTTTCCGGAGACGGAGTTT
ATAGCCGTAACAGCTTATCAGAATGACCGCAT
MXO01091.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5093-PA | 1275 | Doc3-RA | 1..674 | 9..682 | 3295 | 99.5 | Plus |
CG5133-PA | 1176 | Doc1-RA | 223..440 | 231..448 | 715 | 93.1 | Plus |
CG5187-PB | 1410 | Doc2-RB | 303..392 | 320..409 | 250 | 91.1 | Plus |
CG5187-PA | 1410 | Doc2-RA | 303..392 | 320..409 | 250 | 91.1 | Plus |
CG5187-PB | 1410 | Doc2-RB | 484..578 | 501..595 | 225 | 89.4 | Plus |
CG5187-PA | 1410 | Doc2-RA | 484..578 | 501..595 | 225 | 89.4 | Plus |
CG5187-PB | 1410 | Doc2-RB | 226..269 | 243..286 | 145 | 93.1 | Plus |
CG5187-PA | 1410 | Doc2-RA | 226..269 | 243..286 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Doc3-RA | 1671 | CG5093-RA | 123..796 | 9..682 | 3325 | 99.6 | Plus |
Doc1-RB | 1339 | CG5133-RB | 138..652 | 165..682 | 1290 | 83.4 | Plus |
Doc1-RA | 1526 | CG5133-RA | 325..839 | 165..682 | 1290 | 83.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9005772..9006042 | 263..533 | 1340 | 99.6 | Plus |
3L | 28110227 | 3L | 9043385..9043642 | 263..520 | 855 | 88.8 | Plus |
3L | 28110227 | 3L | 9005470..9005636 | 99..265 | 835 | 100 | Plus |
3L | 28110227 | 3L | 9006159..9006296 | 534..671 | 660 | 98.6 | Plus |
3L | 28110227 | 3L | 9014716..9014937 | 525..304 | 480 | 81.1 | Minus |
3L | 28110227 | 3L | 9005318..9005408 | 9..99 | 455 | 100 | Plus |
3L | 28110227 | 3L | 9014492..9014626 | 671..537 | 375 | 85.2 | Minus |
3L | 28110227 | 3L | 9042116..9042196 | 183..263 | 240 | 86.4 | Plus |
3L | 28110227 | 3L | 9043724..9043861 | 534..671 | 195 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:46:35 has no hits.
MXO01091.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:27 Download gff for
MXO01091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-PA | 1..674 | 9..682 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:00 Download gff for
MXO01091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5093-PA | 1..674 | 9..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:25 Download gff for
MXO01091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5093-RA | 121..794 | 9..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:48 Download gff for
MXO01091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 123..796 | 9..682 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:55 Download gff for
MXO01091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Doc3-RA | 123..796 | 9..682 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:55 Download gff for
MXO01091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9005775..9006042 | 266..533 | 99 | -> | Plus |
3L | 9006159..9006299 | 534..675 | 97 | | Plus |
3L | 9005318..9005408 | 9..99 | 100 | -> | Plus |
3L | 9005471..9005636 | 100..265 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:48 Download gff for
MXO01091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8998418..8998508 | 9..99 | 100 | -> | Plus |
arm_3L | 8998571..8998736 | 100..265 | 100 | -> | Plus |
arm_3L | 8998875..8999142 | 266..533 | 99 | -> | Plus |
arm_3L | 8999259..8999399 | 534..675 | 97 | | Plus |