MXO01092.5prime Sequence
858 bp (834 high quality bases) assembled on 2006-12-21
> MXO01092.5prime
CAGTCGACATGATCTCGCCGGAACAAGAAGAGGTCAACATGGTCCTGGAT
CGCCATGTACGGCAGAATATCCAGGACATGATGCACGAGGCTCATGTCCA
GGCGAGCCTGCTGGAGAACGAAGGACGCGGCCGTTTCCACTCGGACTCAA
GTTTGGACCAGGATTCTCTTCACGCTGACGTCATCGTGGAGGAGGATCAG
AGCACCGAACACGGCGCCAACCAGGTGCAAAACTACCACGACATGATGGT
GGACAGTGAACACCACATCGACATAAATGGGTCGCTGCGCAAACGTCGTG
GAAATCTTCCCAAGACCTCTGTAAAGATTTTAAAGCGTTGGCTTTATGAG
CACCGCTATAACGCCTATCCGAGCGATGCGGAGAAGTTCACCCTGTCCCA
GGAGGCCAATCTGACGGTGCTCCAAGTGTGCAACTGGTTCATCAATGCCC
GTCGCCGCATTCTACCGGAGATGATCAGGCGCGAGGGCAACGATCCTCTG
CACTTCACCATATCGCGACGTGGCAAAAAGGTTAGCCCCAACTGTTCGAG
ATCAAGTGCGTTGGGCGCAAACTTGACTGGGCCGAATCCCGCACACGGAA
GTCCTGCTTCCGAAGTGGTCGTTGGCGCTACAGAGGAGGTGGATGGCGCC
GGTGAGATTCACGAGGGCATCGCCAATGTGCTGACCAACTTTGAACAGTA
TGTGCAGGGCCCCAACGGACAAATGGTCAAGATGGAGCCGGAGTACGAGG
ACAGTGTCATCTACAGGTCCGAAGGCGAAGAGAGTGCACAGGGATACGAG
TCCTGTGGGCCGAACAGCGAGGAGGAAGTACGCTTCGAGACCTCCCATGA
TTGGCAGA
MXO01092.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8819-PA | 1281 | achi-RA | 1..850 | 9..858 | 4250 | 100 | Plus |
| CG8819-PC | 1668 | achi-RC | 1..758 | 9..766 | 3790 | 100 | Plus |
| CG8821-PA | 1275 | vis-RA | 186..844 | 200..858 | 3095 | 98.7 | Plus |
| CG8821-PB | 1575 | vis-RB | 186..518 | 200..532 | 1465 | 97.5 | Plus |
| CG8821-PB | 1575 | vis-RB | 516..665 | 617..766 | 750 | 100 | Plus |
| CG8821-PA | 1275 | vis-RA | 1..167 | 9..175 | 510 | 92.2 | Plus |
| CG8821-PB | 1575 | vis-RB | 1..167 | 9..175 | 510 | 92.2 | Plus |
| CG8819-PC | 1668 | achi-RC | 1144..1237 | 765..858 | 470 | 100 | Plus |
| CG8821-PB | 1575 | vis-RB | 1051..1144 | 765..858 | 470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| achi-RA | 2122 | CG8819-RA | 305..1154 | 9..858 | 4250 | 100 | Plus |
| achi-RD | 2277 | CG8819-RD | 73..830 | 9..766 | 3790 | 100 | Plus |
| achi-RC | 2509 | CG8819-RC | 305..1062 | 9..766 | 3790 | 100 | Plus |
| achi-RD | 2277 | CG8819-RD | 1216..1309 | 765..858 | 470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12513566..12514063 | 619..122 | 2490 | 100 | Minus |
| 2R | 25286936 | 2R | 12509777..12510268 | 619..122 | 2095 | 95.2 | Minus |
| 2R | 25286936 | 2R | 12509569..12509720 | 768..617 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 12513358..12513509 | 768..617 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 12514129..12514244 | 124..9 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 12508903..12508997 | 858..764 | 475 | 100 | Minus |
| 2R | 25286936 | 2R | 12512692..12512786 | 858..764 | 475 | 100 | Minus |
| 2R | 25286936 | 2R | 12510327..12510439 | 121..9 | 445 | 92.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:37:21 has no hits.
MXO01092.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:29 Download gff for
MXO01092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| achi-PA | 1..849 | 9..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:01 Download gff for
MXO01092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8819-PA | 1..849 | 9..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:27 Download gff for
MXO01092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8819-RA | 289..1142 | 1..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:36 Download gff for
MXO01092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| achi-RA | 300..1153 | 1..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:49 Download gff for
MXO01092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| achi-RA | 300..1153 | 1..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:49 Download gff for
MXO01092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12513360..12513508 | 618..766 | 100 | <- | Minus |
| 2R | 12512693..12512783 | 767..857 | 100 | <- | Minus |
| 2R | 12513568..12514061 | 124..617 | 100 | <- | Minus |
| 2R | 12514130..12514249 | 1..123 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:36 Download gff for
MXO01092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8400198..8400288 | 767..857 | 100 | <- | Minus |
| arm_2R | 8400865..8401013 | 618..766 | 100 | <- | Minus |
| arm_2R | 8401073..8401566 | 124..617 | 100 | <- | Minus |
| arm_2R | 8401635..8401754 | 1..123 | 96 | | Minus |
