MXO01093.5prime Sequence
904 bp (750 high quality bases) assembled on 2006-12-21
> MXO01093.5prime
CAGTCGACATGGTTTCGCACTACTACAACACACTGCCCTACACACAAAAG
CACAGTGCCGCCAATTTGGCCTATGCCTCAGCGGCGGGCCAGCCATGGAA
CTGGACGCCCAACTACCACCACACGCCGCCGAACCACCAGTTCCTGGGCG
ATGTGGACTCCTCGCATGCCGCCCACCACGCGGCCGCTGCCCACCAGATG
TACTACAACTCCCATCACATGTTCCACTCGGCGGCGGCGGCCTCTGCCGG
GGAGTGGCACTCACCCGCCTCGAGCACGGCGGATAACTTCGTTCAGAATG
TGCCCACGTCGGCCCACCAGCTGATGCAGCAGCACCACCATCATCACGCC
CATGCCTCCAGCAGTTCCGCCAGTTCCGGGAGCAGCAGTAGCGGTGGTGC
ACCGGGTGCGCCCCAGCTCAACGAGACCAACAGCAGCATCGGCGTCGGAG
GAGCAGGCGGTGGCGGTGGTGTTGGCGGGGCCACCGATGGAGGACCAGGT
TCCGCACCACCCAACCATCAGCAGCACATCGCCGAAGGTCTGCCGTCGCC
ACCGATTACCGTTTCGGGCTCGGAAATCTCTAGCCCGGGGGCGCCGACTT
CTGCCTCGTCGCCGCATCATCACTTGGCACACCATTTGAGTGCCGTCGCC
AACAACAACAACAACAACAACAACAACAACAATAGCCCATCCACCCATAA
CAACAACAACAATAACAATTCGGTGAGCAACAACAACAGGACATCGCCAT
CGAAGCCGCCATACTTCGACTGGATGAAGAAGCCCGCCTATCCAGCACAA
CCACAACCAGGCAAAACCCGCACCAAGGATAAGTACGGCGTGATGTACAC
CGACTTCCAGCGCCTGGAGCTGGGAGAAGAGTACTGCACTTCCCGCTACA
TCAC
MXO01093.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1759-PA | 1284 | cad-RA | 1..865 | 9..873 | 4275 | 99.7 | Plus |
| CG1759-PB | 1284 | cad-RB | 1..865 | 9..873 | 4275 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cad-RB | 2353 | CG1759-RB | 215..1110 | 9..904 | 4390 | 99.4 | Plus |
| cad-RA | 2516 | CG1759-RA | 378..1273 | 9..904 | 4390 | 99.4 | Plus |
| cad-RC | 2570 | CG1759-RC | 378..1179 | 9..810 | 4010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20771108..20771910 | 9..811 | 4015 | 100 | Plus |
| 2L | 23513712 | 2L | 20781796..20781892 | 808..904 | 380 | 92.8 | Plus |
Blast to na_te.dros performed 2014-11-28 21:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 5095..5139 | 12..56 | 117 | 73.3 | Plus |
MXO01093.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:30 Download gff for
MXO01093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cad-PA | 1..896 | 9..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:01 Download gff for
MXO01093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1759-PB | 1..896 | 9..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:30 Download gff for
MXO01093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1759-RB | 208..1110 | 1..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:34:53 Download gff for
MXO01093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cad-RA | 371..1273 | 1..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:31 Download gff for
MXO01093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cad-RA | 371..1273 | 1..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:31 Download gff for
MXO01093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20771101..20771909 | 1..810 | 99 | -> | Plus |
| 2L | 20781799..20781892 | 811..904 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:34:53 Download gff for
MXO01093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20771101..20771909 | 1..810 | 99 | -> | Plus |
| arm_2L | 20781799..20781892 | 811..904 | 94 | | Plus |
