MXO01096.5prime Sequence
854 bp (785 high quality bases) assembled on 2006-12-21
> MXO01096.5prime
CAGTCGACATGAACCAGACATGCAAAGTGTGCGGTGAGCCGGCGGCGGGC
TTCCATTTTGGCGCCTTCACCTGCGAGGGCTGCAAGTCCTTCTTTGGCCG
CTCTTACAACAACATCAGCACCATCAGCGAGTGCAAGAACGAGGGCAAGT
GCATCATCGACAAGAAGAACCGCACCACCTGCAAGGCGTGCCGCTTGAGG
AAGTGCTACAACGTGGGCATGTCGAAGGGGGGATCCCGCTACGGACGTCG
CTCCAACTGGTTCAAGATCCATTGTCTGCTGCAGGAGCACGAACAGGCCG
CCGCAGCGGCGGGCAAGGCGCCTCCATTAGCGGGTGGCGTATCGGTGGGT
GGTGCCCCGTCGGCCTCTTCCCCGGTGGGCTCGCCACACACTCCCGGATT
TGGGGACATGGCCGCCCATTTGCACCACCATCATCAGCAGCAGCAGCAGC
AGCAGGTGCCGCGTCATCCACATATGCCTCTGCTGGGCTATCCCAGCTAT
CTGTCCGACCCATCCGCCGCCCTGCCCTTCTTCAGCATGATGGGCGGTGT
ACCGCACCAGTCGCCCTTCCAGCTGCCCCCACACCTCCTCTTCCCAGGCT
ACCATGCAAGTGCTGCCGCTGCAGCGGCTTCTGCTGCCGATGCCGCTTAC
CGGCAGGAGATGTACAAGCACCGCCAGAGCGTGGATTCCGTTGAGTCGCA
GAACCGCTTTAGTCCCGCCAGCCAGCCACCAGTGGTGCAGCCCACCTCCT
CGGCCCGCCAGTCGCCCATCGATGTCTGCCTGGAGGAGGATGTTCACTCC
GTGCACAGCCATCAGTCGTCCGCAAGCCTCCTGCATCCCATTGCCATCCG
AGCC
MXO01096.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4717-PA | 1290 | kni-RA | 1..846 | 9..854 | 4230 | 100 | Plus |
CG4761-PA | 1944 | knrl-RA | 232..308 | 213..289 | 235 | 92.2 | Plus |
CG7383-PB | 1122 | eg-RB | 226..281 | 234..289 | 180 | 92.8 | Plus |
CG7383-PA | 1122 | eg-RA | 226..281 | 234..289 | 180 | 92.8 | Plus |
CG4761-PA | 1944 | knrl-RA | 28..131 | 9..112 | 170 | 86.5 | Plus |
CG4761-PA | 1944 | knrl-RA | 151..212 | 132..193 | 160 | 90.3 | Plus |
CG32689-PA | 366 | CG32689-RA | 64..96 | 423..455 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kni-RB | 1911 | CG4717-RB | 116..961 | 9..854 | 4230 | 100 | Plus |
kni-RA | 2100 | CG4717-RA | 305..1150 | 9..854 | 4230 | 100 | Plus |
knrl-RB | 2925 | CG4761-RB | 992..1272 | 9..289 | 730 | 84 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20693280..20694049 | 854..85 | 3850 | 100 | Minus |
3L | 28110227 | 3L | 20599778..20599982 | 289..85 | 515 | 83.4 | Minus |
3L | 28110227 | 3L | 20694263..20694340 | 86..9 | 390 | 100 | Minus |
3L | 28110227 | 3L | 21816347..21816480 | 156..289 | 355 | 84.3 | Plus |
3L | 28110227 | 3L | 20602193..20602270 | 86..9 | 225 | 85.9 | Minus |
3L | 28110227 | 3L | 21814779..21814856 | 9..86 | 195 | 83.3 | Plus |
Blast to na_te.dros performed 2014-11-28 20:00:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2443..2519 | 105..184 | 150 | 67.5 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 596..728 | 515..642 | 113 | 60.6 | Plus |
MXO01096.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:34 Download gff for
MXO01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kni-PA | 1..846 | 9..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:02 Download gff for
MXO01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4717-PA | 1..846 | 9..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:34 Download gff for
MXO01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4717-RA | 290..1135 | 9..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:49 Download gff for
MXO01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kni-RA | 305..1150 | 9..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:15 Download gff for
MXO01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kni-RA | 305..1150 | 9..854 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:15 Download gff for
MXO01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20693280..20694047 | 87..854 | 100 | <- | Minus |
3L | 20694263..20694347 | 1..86 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:49 Download gff for
MXO01096.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20686380..20687147 | 87..854 | 100 | <- | Minus |
arm_3L | 20687363..20687447 | 1..86 | 95 | | Minus |