Clone MXO01096 Report

Search the DGRC for MXO01096

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:10
Well:96
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptkni-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01096.5prime Sequence

854 bp (785 high quality bases) assembled on 2006-12-21

> MXO01096.5prime
CAGTCGACATGAACCAGACATGCAAAGTGTGCGGTGAGCCGGCGGCGGGC
TTCCATTTTGGCGCCTTCACCTGCGAGGGCTGCAAGTCCTTCTTTGGCCG
CTCTTACAACAACATCAGCACCATCAGCGAGTGCAAGAACGAGGGCAAGT
GCATCATCGACAAGAAGAACCGCACCACCTGCAAGGCGTGCCGCTTGAGG
AAGTGCTACAACGTGGGCATGTCGAAGGGGGGATCCCGCTACGGACGTCG
CTCCAACTGGTTCAAGATCCATTGTCTGCTGCAGGAGCACGAACAGGCCG
CCGCAGCGGCGGGCAAGGCGCCTCCATTAGCGGGTGGCGTATCGGTGGGT
GGTGCCCCGTCGGCCTCTTCCCCGGTGGGCTCGCCACACACTCCCGGATT
TGGGGACATGGCCGCCCATTTGCACCACCATCATCAGCAGCAGCAGCAGC
AGCAGGTGCCGCGTCATCCACATATGCCTCTGCTGGGCTATCCCAGCTAT
CTGTCCGACCCATCCGCCGCCCTGCCCTTCTTCAGCATGATGGGCGGTGT
ACCGCACCAGTCGCCCTTCCAGCTGCCCCCACACCTCCTCTTCCCAGGCT
ACCATGCAAGTGCTGCCGCTGCAGCGGCTTCTGCTGCCGATGCCGCTTAC
CGGCAGGAGATGTACAAGCACCGCCAGAGCGTGGATTCCGTTGAGTCGCA
GAACCGCTTTAGTCCCGCCAGCCAGCCACCAGTGGTGCAGCCCACCTCCT
CGGCCCGCCAGTCGCCCATCGATGTCTGCCTGGAGGAGGATGTTCACTCC
GTGCACAGCCATCAGTCGTCCGCAAGCCTCCTGCATCCCATTGCCATCCG
AGCC

MXO01096.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-07 22:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4717-PA 1290 kni-RA 1..846 9..854 4230 100 Plus
CG4761-PA 1944 knrl-RA 232..308 213..289 235 92.2 Plus
CG7383-PB 1122 eg-RB 226..281 234..289 180 92.8 Plus
CG7383-PA 1122 eg-RA 226..281 234..289 180 92.8 Plus
CG4761-PA 1944 knrl-RA 28..131 9..112 170 86.5 Plus
CG4761-PA 1944 knrl-RA 151..212 132..193 160 90.3 Plus
CG32689-PA 366 CG32689-RA 64..96 423..455 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
kni-RB 1911 CG4717-RB 116..961 9..854 4230 100 Plus
kni-RA 2100 CG4717-RA 305..1150 9..854 4230 100 Plus
knrl-RB 2925 CG4761-RB 992..1272 9..289 730 84 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20693280..20694049 854..85 3850 100 Minus
3L 28110227 3L 20599778..20599982 289..85 515 83.4 Minus
3L 28110227 3L 20694263..20694340 86..9 390 100 Minus
3L 28110227 3L 21816347..21816480 156..289 355 84.3 Plus
3L 28110227 3L 20602193..20602270 86..9 225 85.9 Minus
3L 28110227 3L 21814779..21814856 9..86 195 83.3 Plus
Blast to na_te.dros performed 2014-11-28 20:00:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2443..2519 105..184 150 67.5 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 596..728 515..642 113 60.6 Plus

MXO01096.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-21 20:25:34 Download gff for MXO01096.5prime
Subject Subject Range Query Range Percent Splice Strand
kni-PA 1..846 9..854 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:02 Download gff for MXO01096.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4717-PA 1..846 9..854 100   Plus
Sim4 to dmel-all-transcript-r4.3.fasta performed 2006-07-14 13:29:34 Download gff for MXO01096.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4717-RA 290..1135 9..854 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:49 Download gff for MXO01096.5prime
Subject Subject Range Query Range Percent Splice Strand
kni-RA 305..1150 9..854 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:15 Download gff for MXO01096.5prime
Subject Subject Range Query Range Percent Splice Strand
kni-RA 305..1150 9..854 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:15 Download gff for MXO01096.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20693280..20694047 87..854 100 <- Minus
3L 20694263..20694347 1..86 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:49 Download gff for MXO01096.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20686380..20687147 87..854 100 <- Minus
arm_3L 20687363..20687447 1..86 95   Minus