MXO01301.3prime Sequence
795 bp (761 high quality bases) assembled on 2007-03-15
> MXO01301.3prime
ATGGTCTAGAAAGCTTGCCTGCTCTTGCCAAGATGAAATATAATCGAGTA
GCTCCTCGTCATCTGGCTGCTCGTCACTGAAGCTATCAAAGGAGTCGAAT
TTGAGGTCCTGCTCTTGTAGTTCCTGTTTGATATAGCCACCTCCGGAAAT
CTCGGATCCGGAGTACGACGGCGTGGGCGAGGCGGAGTGGTACGAGTGGG
ATTGGGCAGACTGGGTGGCTCCCGTCAAGAACTGTTGCGAACTGTCCAAA
CTATCGTTGTAATCGTTATAGCTGCTGCCATCGTTGCTACTTTCATCGGC
GGAATTGTAGATGTGACGAGTTGATGAAGCAGTGCCATCATCAAGCATGT
CCTGTAGTCCTCGAATATATTCAACGGCGATTCGCAGTGCGTCCACCTTG
GATAACTTCTTGCTGCTACCACGTCCTCCATTGGACAGCGAGTTTACCAC
AGTTTGAGGCAAATGCTGGCGGAGATTGACGAATCCATTGTTCACCTGCT
TCACGCGATTGCGTTCACGGGCATTTCGTCTGGCTACCGATGGCAATTGC
TCGCCATAGGGCATGTTATTGTAGTTGAACTTCTTCTTCTGGGAGGACAA
CATGGGTCCAACATTGGACTGTTGACTCTGCTGCATATTCTGCAGTTGGC
TGGTACCCAAAGGTATTTTCGGAGCAATCAACTGGTGCTGCTGCGTTTGA
TGGTGATGCTGATGTTGCAGCAAGAAAATGTTACTGTTGGTCAGCTGGTA
ATGCTGCTGCTGGAATTTGCTGCTGCAAATGCTCGTCATGTCGAC
MXO01301.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3839-PA | 774 | l(1)sc-RA | 1..771 | 789..19 | 3830 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)sc-RA | 1097 | CG3839-RA | 75..846 | 790..19 | 3845 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 409795..410566 | 790..19 | 3845 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:29 has no hits.
MXO01301.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:02 Download gff for
MXO01301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3839-PA | 1..774 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:59 Download gff for
MXO01301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 67..849 | 14..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:25 Download gff for
MXO01301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 69..851 | 14..795 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:25 Download gff for
MXO01301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 409789..410571 | 14..795 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:59 Download gff for
MXO01301.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 303822..304604 | 14..795 | 99 | | Minus |
MXO01301.5prime Sequence
795 bp (795 high quality bases) assembled on 2007-03-15
> MXO01301.5prime
CAGTCGACATGACGAGCATTTGCAGCAGCAAATTCCAGCAGCAGCATTAC
CAGCTGACCAACAGTAACATTTTCTTGCTGCAACATCAGCATCACCATCA
AACGCAGCAGCACCAGTTGATTGCTCCGAAAATACCTTTGGGTACCAGCC
AACTGCAGAATATGCAGCAGAGTCAACAGTCCAATGTTGGACCCATGTTG
TCCTCCCAGAAGAAGAAGTTCAACTACAATAACATGCCCTATGGCGAGCA
ATTGCCATCGGTAGCCAGACGAAATGCCCGTGAACGCAATCGCGTGAAGC
AGGTGAACAATGGATTCGTCAATCTCCGCCAGCATTTGCCTCAAACTGTG
GTAAACTCGCTGTCCAATGGAGGACGTGGTAGCATTTTTACCCCCCCCAC
GGTGGACACACTGCGAATCGCCAAAGAATATATTCGAGGACTACAGGACA
TGCTTGATGATGGCACTGCTTCATCAACTCGTCACATCTACAATTCCGCC
GATGAAAGTAGCAACGATGGCAGCAGCTATAACGATTACAACGATAGTTT
GGACAGTTCGCAACAGTTCTTGACGGGAGCCACCCAGTCTGCCCAATCCC
ACTCGTACCACTCCGCCTCGCCCACGCCGTCGTACTCCGGATCCGAGATT
TCCGGAGGTGGCTATATCAAACAGGAACTACAAGAGCAGGACCTCAAATT
CGACTCCTTTGATAGCTTCAGTGACGAGCAGCCAGATGACGAGGAGCTAC
TCGATTATATTTCATCTTGGCAAGAGCAGGCAAGCTTTCTAGACC
MXO01301.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3839-PA | 774 | l(1)sc-RA | 1..376 | 9..384 | 1880 | 100 | Plus |
| CG3839-PA | 774 | l(1)sc-RA | 418..771 | 426..779 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)sc-RA | 1097 | CG3839-RA | 75..846 | 8..779 | 3635 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 409795..410566 | 8..779 | 3635 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:56 has no hits.
MXO01301.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:03 Download gff for
MXO01301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3839-PA | 1..774 | 9..782 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:38 Download gff for
MXO01301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 73..849 | 8..784 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:27 Download gff for
MXO01301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)sc-RA | 75..851 | 8..784 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:27 Download gff for
MXO01301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 409795..410571 | 8..784 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:38 Download gff for
MXO01301.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 303828..304604 | 8..784 | 97 | | Plus |
