MXO01302.3prime Sequence
725 bp (724 high quality bases) assembled on 2007-03-15
> MXO01302.3prime
ATGGTCTAGAAAGCTTGCTCTGCTCATGATCTCATCGATGGTGAAGCCCA
GCATCCGCTTGGGCTTCTCTGAGCTCGAGGATGACGAGGATAGATCCAGG
ACAGGCAGATGCTGTGCCAAATTCTCAGGTTGAGGCGAACTCAATGCCTG
GTTTGGCACCGAATGTGAAGTGGCTGGTGAGGTGGTCACCACCACCTCCT
TGGTGCTCTGCTCGCTGTGGCTCTGGAGGTGACTCTTGAGGTTGGCCCGC
TGGTTGAAGCTCCGCTGGCAGATGGGACACTTGTGCGGACCCTCCTCCAG
ATGGGTGACCTTGTGCACGGCCAGGGTGCGCGACTGGCAGAAACCCTTGC
CGCAATCGCTGCACTTGAAGGGCTTGTCCTTGGAGTGCATGTACCGGTGG
TCCCGCAGATGATCCTGTCGCCGGAAGGCTTTGCCGCAGATGTCGCAGGA
GTAAGGCCTCTCGTCCGTGTGGGTTCTCTCATGGATGAGCAGATTGTACG
ACTTGGTGAACTGCCGGTTGCAGTACTTGCAGATGAACTGCTTCTTTGGC
CGACTGCTGCCAGTTGCGCCGCTGGGTACACCACTCGCTCCACCGGCACC
ACCCAGTTTCAGGGTGGGCATGGCTCCGAAGTGGCGACCCATGACCGCGG
CATGCAGACTATGGAGGCCAGCGGGATAGGGACGCACATGATGCGGATGT
GGGTGAGGGTGGTGCGGATGGCCGT
MXO01302.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3851-PA | 1179 | odd-RA | 470..1176 | 725..19 | 3510 | 99.8 | Minus |
| CG3242-PA | 1737 | sob-RA | 1174..1314 | 546..406 | 405 | 91.4 | Minus |
| CG10021-PB | 2235 | bowl-RB | 709..914 | 540..335 | 355 | 86.8 | Minus |
| CG10021-PC | 2235 | bowl-RC | 709..914 | 540..335 | 355 | 86.8 | Minus |
| CG10021-PD | 2235 | bowl-RD | 709..914 | 540..335 | 355 | 86.8 | Minus |
| CG10021-PA | 2235 | bowl-RA | 709..914 | 540..335 | 355 | 86.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| odd-RA | 2347 | CG3851-RA | 868..1574 | 725..19 | 3520 | 99.9 | Minus |
| sob-RA | 2611 | CG3242-RA | 1764..2083 | 546..227 | 805 | 83.8 | Minus |
| bowl-RH | 3435 | CG10021-RH | 1060..1378 | 552..234 | 710 | 81.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3604997..3605703 | 19..725 | 3520 | 99.9 | Plus |
| 2L | 23513712 | 2L | 3578861..3579006 | 401..546 | 535 | 91.1 | Plus |
| 2L | 23513712 | 2L | 3780422..3780581 | 552..393 | 485 | 86.9 | Minus |
| 2L | 23513712 | 2L | 3578541..3578701 | 227..387 | 295 | 78.9 | Plus |
| 2L | 23513712 | 2L | 3781903..3782064 | 395..234 | 225 | 75.9 | Minus |
| 2L | 23513712 | 2L | 3545660..3545731 | 539..468 | 180 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:40 has no hits.
MXO01302.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:04 Download gff for
MXO01302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3851-PA | 470..1179 | 18..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:47 Download gff for
MXO01302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| odd-RA | 868..1580 | 11..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:10 Download gff for
MXO01302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| odd-RA | 868..1580 | 11..725 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:10 Download gff for
MXO01302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3604998..3605703 | 20..725 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:47 Download gff for
MXO01302.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3604998..3605703 | 20..725 | 99 | | Plus |
MXO01302.5prime Sequence
886 bp (722 high quality bases) assembled on 2007-03-15
> MXO01302.5prime
CAGTCGACATGTCTTCCACATCGGCCTCACCCATCAGCAACATAACCGTG
GATGACGAGCTCAACTTAAGCAGAGAACAAGACTTTGCTGAAGAGGATTT
CATAGTGATCAAGGAGGAGCGCGAGACAAGTCTCTCCCCCATGCTGACGC
CCCCGCACACGCCCACCGAGGAGCCGCTGAGGAGAGTGCATCCGGCGATA
AGCGAGGAGGCGGTGGCCACCCAGCTGCACATGCGACACATGGCCCACTA
CCAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAGCACCGCCTGTGGC
TGCAGATGCAGCAGCAGCAGCAACAACATCAGGCTCCACAGCAGTATCCA
GTTTATCCCACAGCCAGCGCCGATCCCGTGGCCGTGCTCCTCCCCCCCCC
GAACCACTGGATCCGCAACGCAGCCATCTACCAGCAGCAACAGCAGCAGC
AGCAACATCCGCACCATCATCACCACCACGGCCATCCGCACCACCCTCAC
CCACATCCGCATCATGTGCGTCCCTATCCCGCTGGCCTCCATAGTCTGCA
TGCCGCGGTCATGGGTCGCCACTTCGGAGCCATGCCCACCCTGAAACTGG
GTGGTGCCGGTGGAGCGAGTGGTGTACCCAGCGGCGCAACTGGCAGCAGT
CGGCCAAAGAAGCAGTTCATCTGCAAGTACTGCAACCGGCAGTTCACCAA
GTCGTACAATCTGCTCATCCATGAGAGAACCCACACGGACGAGAGGCCTT
ACTCCTGCGACATCTGCGGCAAAGCCTTCCGGCGACAGGATCATCTGCGG
GACCACCGGTACATCCACTCCAAGGACAAGCCCTTCAAGTGCAGCGATTG
CGGCAAGGGTTTCTGCCAGTCGCGCACCCTGGCCGT
MXO01302.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3851-PA | 1179 | odd-RA | 393..878 | 401..886 | 2430 | 100 | Plus |
| CG3851-PA | 1179 | odd-RA | 1..379 | 9..387 | 1895 | 100 | Plus |
| CG3242-PA | 1737 | sob-RA | 1174..1314 | 657..797 | 405 | 91.4 | Plus |
| CG10021-PB | 2235 | bowl-RB | 709..914 | 663..868 | 355 | 86.8 | Plus |
| CG10021-PC | 2235 | bowl-RC | 709..914 | 663..868 | 355 | 86.8 | Plus |
| CG10021-PD | 2235 | bowl-RD | 709..914 | 663..868 | 355 | 86.8 | Plus |
| CG10021-PA | 2235 | bowl-RA | 709..914 | 663..868 | 355 | 86.8 | Plus |
| CG17816-PD | 2319 | CG17816-RD | 1844..1877 | 432..465 | 145 | 97 | Plus |
| CG17816-PB | 2637 | CG17816-RB | 2516..2549 | 432..465 | 145 | 97 | Plus |
| CG15470-PA | 1038 | CG15470-RA | 742..769 | 432..459 | 140 | 100 | Plus |
| CG7958-PA | 3408 | tna-RA | 206..233 | 430..457 | 140 | 100 | Plus |
| CG7958-PB | 3450 | tna-RB | 248..275 | 430..457 | 140 | 100 | Plus |
| CG12701-PB | 4791 | CG12701-RB | 509..536 | 427..454 | 140 | 100 | Plus |
| CG12701-PA | 4791 | CG12701-RA | 509..536 | 427..454 | 140 | 100 | Plus |
| CG11895-PA | 10725 | stan-RA | 10376..10403 | 430..457 | 140 | 100 | Plus |
| CG1028-PH | 894 | Antp-RH | 327..353 | 431..457 | 135 | 100 | Plus |
| CG1028-PK | 1086 | Antp-RK | 327..353 | 431..457 | 135 | 100 | Plus |
| CG1028-PG | 1086 | Antp-RG | 327..353 | 431..457 | 135 | 100 | Plus |
| CG1028-PF | 1098 | Antp-RF | 327..353 | 431..457 | 135 | 100 | Plus |
| CG1028-PE | 1098 | Antp-RE | 327..353 | 431..457 | 135 | 100 | Plus |
| CG1028-PD | 1125 | Antp-RD | 327..353 | 431..457 | 135 | 100 | Plus |
| CG1028-PN | 1125 | Antp-RN | 327..353 | 431..457 | 135 | 100 | Plus |
| CG1028-PL | 1137 | Antp-RL | 327..353 | 431..457 | 135 | 100 | Plus |
| CG1028-PI | 1137 | Antp-RI | 327..353 | 431..457 | 135 | 100 | Plus |
| CG1028-PJ | 1137 | Antp-RJ | 327..353 | 431..457 | 135 | 100 | Plus |
| CG1028-PM | 1137 | Antp-RM | 327..353 | 431..457 | 135 | 100 | Plus |
| CG33261-PI | 1704 | Trl-RI | 1395..1421 | 431..457 | 135 | 100 | Plus |
| CG33261-PA | 1749 | Trl-RA | 1395..1421 | 431..457 | 135 | 100 | Plus |
| CG33261-PF | 1749 | Trl-RF | 1395..1421 | 431..457 | 135 | 100 | Plus |
| CG31240-PA | 1839 | repo-RA | 441..467 | 431..457 | 135 | 100 | Plus |
| CG31761-PC | 1899 | bru-2-RC | 277..308 | 432..463 | 135 | 96.8 | Plus |
| CG31761-PA | 1899 | bru-2-RA | 277..308 | 432..463 | 135 | 96.8 | Plus |
| CG31761-PD | 2214 | bru-2-RD | 277..308 | 432..463 | 135 | 96.8 | Plus |
| CG31761-PE | 2682 | bru-2-RE | 277..308 | 432..463 | 135 | 96.8 | Plus |
| CG11641-PA | 2985 | CG11641-RA | 382..413 | 432..463 | 135 | 96.8 | Plus |
| CG13598-PA | 3549 | sba-RA | 1077..1103 | 431..457 | 135 | 100 | Plus |
| CG13598-PB | 4089 | sba-RB | 1077..1103 | 431..457 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| odd-RA | 2347 | CG3851-RA | 399..1276 | 9..886 | 4240 | 98.9 | Plus |
| sob-RA | 2611 | CG3242-RA | 1764..1990 | 657..883 | 730 | 88.6 | Plus |
| bowl-RH | 3435 | CG10021-RH | 1060..1292 | 651..883 | 655 | 85.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3605295..3606101 | 886..80 | 3885 | 98.8 | Minus |
| 2L | 23513712 | 2L | 3578861..3579006 | 802..657 | 535 | 91.1 | Minus |
| 2L | 23513712 | 2L | 3780422..3780581 | 651..810 | 485 | 86.9 | Plus |
| 2L | 23513712 | 2L | 3606286..3606358 | 81..9 | 365 | 100 | Minus |
| 2L | 23513712 | 2L | 3578634..3578704 | 883..813 | 220 | 87.3 | Minus |
| 2L | 23513712 | 2L | 3781903..3781978 | 808..883 | 185 | 82.9 | Plus |
Blast to na_te.dros performed 2014-11-28 22:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 1200..1277 | 402..487 | 114 | 65.1 | Plus |
MXO01302.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:04 Download gff for
MXO01302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3851-PA | 1..878 | 9..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:06 Download gff for
MXO01302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| odd-RA | 392..1276 | 1..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:29 Download gff for
MXO01302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| odd-RA | 392..1276 | 1..886 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:29 Download gff for
MXO01302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3605295..3606099 | 82..886 | 98 | <- | Minus |
| 2L | 3606286..3606365 | 1..81 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:06 Download gff for
MXO01302.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3605295..3606099 | 82..886 | 98 | <- | Minus |
| arm_2L | 3606286..3606365 | 1..81 | 96 | | Minus |
