Clone MXO01303 Report

Search the DGRC for MXO01303

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:3
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptdpn-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01303.3prime Sequence

805 bp (757 high quality bases) assembled on 2007-03-15

> MXO01303.3prime
ATGGTCTAGAAAGCTTGCCCACGGCCTCCAAGCGGAGCTCGACTTTTCGA
TGGCGCCAGCTAGGAATTTCTTGGACGAGGGCTCGTCCAGGGAGCAGTCG
CTGGACTCGGCCTCCGCCTCCCTGTCGCGCTTGGCGATTCCGCTGGTGGA
GCTCACTTGCTGTTGCTGCAAGTGGGCCAGCGGTCGCGAGCATCCGCTGC
TGTCGTGGCTTCCGGCACTCAAGTTGAGGGATCCGCTGGTGTTGAAGGAG
GTCTCCGCGCTGGTTGGTGGCGGAGTTGAGAAGACGCCGGCGAAACTGTG
CTTGCTCATCACATCCACGGTGGGCGAGGCAGCCCGGGACTCCTCGCAGT
GGCTGGAGATGGAGGAGATTGGGCTCAGCGGTGGGCTCGTGCTGTTCTTC
ACCGGCAGCTGCGTTTGGCCGGGCAGTGTGTGGATGAGGTTTTCCGGAAG
ATTGGCCGGAACTGAGGTATTGACCGGTTTGCTGAACGCGCTCATCCTGA
AGCTCTGTGTATAGTCATTTAGATGTGTGGGATTGGCAATGCTGGCCAAG
GCGGCACTGGCTGTTCCAGCTGCGACTCCCGCTGCAGATCCTGGCCAGGC
AAAGGGTCCCGGAGGCGGAGCAGCGGAACCTGTGTTCGGCATGATGAGGG
CAAACTCTCCCGAGGGCAGGCGGGAGGGAATTAGCTGAAGTCCACCCATT
TGGATGGCCGGAGCCGATGACTCCGTGCGGCTGTTGTTGTTCAAGTCCTG
CGGCAACGAGGGAAACAGCGGAGTGGGAGCAGCCGTGACAGCTGTGGCGG
GAAAC

MXO01303.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8704-PA 1308 dpn-RA 519..1305 805..19 3910 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
dpn-RA 2036 CG8704-RA 801..1587 805..19 3920 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8229420..8230206 19..805 3920 99.9 Plus
Blast to na_te.dros performed on 2014-11-28 19:28:50 has no hits.

MXO01303.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:05 Download gff for MXO01303.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8704-PA 519..1308 18..805 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:53 Download gff for MXO01303.3prime
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 801..1587 19..805 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:13 Download gff for MXO01303.3prime
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 801..1587 19..805 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:13 Download gff for MXO01303.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8229420..8230206 19..805 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:53 Download gff for MXO01303.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4116925..4117711 19..805 99   Plus

MXO01303.5prime Sequence

898 bp (715 high quality bases) assembled on 2007-03-15

> MXO01303.5prime
CAGTCGACATGGATTACAAAAACGATATTAATTCCGACGACGATTTCGAC
TGCTCCAACGGCTATAGCGACAGCTATGGCTCCAATGGACGCATGTCCAA
TCCCAATGGATTGTCAAAAGCAGAACTTAGAAAGACCAACAAACCGATTA
TGGAGAAACGTCGCCGAGCTCGCATTAATCACTGCCTCAACGAACTGAAG
TCCCTTATCCTGGAGGCGATGAAAAAAGACCCGGCTCGTCATACCAAACT
GGAGAAGGCCGACATACTTGAGATGACGGTGAAGCATCTGCAGTCGGTGC
AGCGCCAGCAGCTCAACATGGCCATCCAATCTGATCCCAGCGTTGTCCAG
AAGTTCAAGACGGGATTCGTTGAGTGCGCGGAGGATTTCCCCCCCCCCGT
AAGCCAAATGGATGGCATCAATAAAAGAGTTCGTCAGCGGCTCAGCGCCC
ATCTTAACCAGTGTGCCAATAGTCTGGAGCAGATCGGTTCGATGAGCAAC
TTCAGCAATGGATACCGTGGTGGCTTGTTTCCCGCCACAGCTGTCACGGC
TGCTCCCACTCCGCTGTTTCCCTCGTTGCCGCAGGACTTGAACAACAACA
GCCGCACGGAGTCATCGGCTCCGGCCATCCAAATGGGTGGACTTCAGCTA
ATTCCCTCCCGCCTGCCCTCGGGAGAGTTTGCCCTCATCATGCCGAACAC
AGGTTCCGCTGCTCCGCCTCCGGGACCCTTTGCCTGGCCAGGATCTGCAG
CGGGAGTCGCAGCTGGAACAGCCAGTGCCGCCTTGGCCAGCATTGCCAAT
CCCACACATCTAAATGACTATACACAGAGCTTCAGGATGAGCGCGTTCAG
CAAACCGGTCAATACCTCAGTTCCGGCCAATCTTCCGGAAAACCTCAT

MXO01303.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8704-PA 1308 dpn-RA 421..890 429..898 2350 100 Plus
CG8704-PA 1308 dpn-RA 1..377 9..385 1860 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
dpn-RA 2036 CG8704-RA 283..1172 9..898 4225 98.3 Plus
h-RB 2335 CG6494-RB 594..767 138..311 360 80.5 Plus
h-RA 2139 CG6494-RA 398..571 138..311 360 80.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8229835..8230502 898..231 3115 97.8 Minus
2R 25286936 2R 8231923..8232048 134..9 630 100 Minus
2R 25286936 2R 8231599..8231696 230..133 490 100 Minus
3L 28110227 3L 8677605..8677685 231..311 210 84 Plus
Blast to na_te.dros performed on 2014-11-28 22:02:02 has no hits.

MXO01303.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:05 Download gff for MXO01303.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8704-PA 1..890 9..898 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:22 Download gff for MXO01303.5prime
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 283..1172 9..898 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:56 Download gff for MXO01303.5prime
Subject Subject Range Query Range Percent Splice Strand
dpn-RA 283..1172 9..898 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:56 Download gff for MXO01303.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8229835..8230502 231..898 97 <- Minus
2R 8231599..8231694 135..230 100 <- Minus
2R 8231923..8232048 9..134 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:22 Download gff for MXO01303.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4119428..4119553 9..134 100   Minus
arm_2R 4117340..4118007 231..898 97 <- Minus
arm_2R 4119104..4119199 135..230 100 <- Minus