Clone Sequence Records
MXO01303.3prime Sequence
805 bp (757 high quality bases) assembled on 2007-03-15
> MXO01303.3prime
ATGGTCTAGAAAGCTTGCCCACGGCCTCCAAGCGGAGCTCGACTTTTCGA
TGGCGCCAGCTAGGAATTTCTTGGACGAGGGCTCGTCCAGGGAGCAGTCG
CTGGACTCGGCCTCCGCCTCCCTGTCGCGCTTGGCGATTCCGCTGGTGGA
GCTCACTTGCTGTTGCTGCAAGTGGGCCAGCGGTCGCGAGCATCCGCTGC
TGTCGTGGCTTCCGGCACTCAAGTTGAGGGATCCGCTGGTGTTGAAGGAG
GTCTCCGCGCTGGTTGGTGGCGGAGTTGAGAAGACGCCGGCGAAACTGTG
CTTGCTCATCACATCCACGGTGGGCGAGGCAGCCCGGGACTCCTCGCAGT
GGCTGGAGATGGAGGAGATTGGGCTCAGCGGTGGGCTCGTGCTGTTCTTC
ACCGGCAGCTGCGTTTGGCCGGGCAGTGTGTGGATGAGGTTTTCCGGAAG
ATTGGCCGGAACTGAGGTATTGACCGGTTTGCTGAACGCGCTCATCCTGA
AGCTCTGTGTATAGTCATTTAGATGTGTGGGATTGGCAATGCTGGCCAAG
GCGGCACTGGCTGTTCCAGCTGCGACTCCCGCTGCAGATCCTGGCCAGGC
AAAGGGTCCCGGAGGCGGAGCAGCGGAACCTGTGTTCGGCATGATGAGGG
CAAACTCTCCCGAGGGCAGGCGGGAGGGAATTAGCTGAAGTCCACCCATT
TGGATGGCCGGAGCCGATGACTCCGTGCGGCTGTTGTTGTTCAAGTCCTG
CGGCAACGAGGGAAACAGCGGAGTGGGAGCAGCCGTGACAGCTGTGGCGG
GAAAC
MXO01303.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8704-PA | 1308 | dpn-RA | 519..1305 | 805..19 | 3910 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpn-RA | 2036 | CG8704-RA | 801..1587 | 805..19 | 3920 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8229420..8230206 | 19..805 | 3920 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:28:50 has no hits.
MXO01303.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:05 Download gff for
MXO01303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8704-PA | 519..1308 | 18..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:53 Download gff for
MXO01303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-RA | 801..1587 | 19..805 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:13 Download gff for
MXO01303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-RA | 801..1587 | 19..805 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:13 Download gff for
MXO01303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8229420..8230206 | 19..805 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:53 Download gff for
MXO01303.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4116925..4117711 | 19..805 | 99 | | Plus |
MXO01303.5prime Sequence
898 bp (715 high quality bases) assembled on 2007-03-15
> MXO01303.5prime
CAGTCGACATGGATTACAAAAACGATATTAATTCCGACGACGATTTCGAC
TGCTCCAACGGCTATAGCGACAGCTATGGCTCCAATGGACGCATGTCCAA
TCCCAATGGATTGTCAAAAGCAGAACTTAGAAAGACCAACAAACCGATTA
TGGAGAAACGTCGCCGAGCTCGCATTAATCACTGCCTCAACGAACTGAAG
TCCCTTATCCTGGAGGCGATGAAAAAAGACCCGGCTCGTCATACCAAACT
GGAGAAGGCCGACATACTTGAGATGACGGTGAAGCATCTGCAGTCGGTGC
AGCGCCAGCAGCTCAACATGGCCATCCAATCTGATCCCAGCGTTGTCCAG
AAGTTCAAGACGGGATTCGTTGAGTGCGCGGAGGATTTCCCCCCCCCCGT
AAGCCAAATGGATGGCATCAATAAAAGAGTTCGTCAGCGGCTCAGCGCCC
ATCTTAACCAGTGTGCCAATAGTCTGGAGCAGATCGGTTCGATGAGCAAC
TTCAGCAATGGATACCGTGGTGGCTTGTTTCCCGCCACAGCTGTCACGGC
TGCTCCCACTCCGCTGTTTCCCTCGTTGCCGCAGGACTTGAACAACAACA
GCCGCACGGAGTCATCGGCTCCGGCCATCCAAATGGGTGGACTTCAGCTA
ATTCCCTCCCGCCTGCCCTCGGGAGAGTTTGCCCTCATCATGCCGAACAC
AGGTTCCGCTGCTCCGCCTCCGGGACCCTTTGCCTGGCCAGGATCTGCAG
CGGGAGTCGCAGCTGGAACAGCCAGTGCCGCCTTGGCCAGCATTGCCAAT
CCCACACATCTAAATGACTATACACAGAGCTTCAGGATGAGCGCGTTCAG
CAAACCGGTCAATACCTCAGTTCCGGCCAATCTTCCGGAAAACCTCAT
MXO01303.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8704-PA | 1308 | dpn-RA | 421..890 | 429..898 | 2350 | 100 | Plus |
CG8704-PA | 1308 | dpn-RA | 1..377 | 9..385 | 1860 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpn-RA | 2036 | CG8704-RA | 283..1172 | 9..898 | 4225 | 98.3 | Plus |
h-RB | 2335 | CG6494-RB | 594..767 | 138..311 | 360 | 80.5 | Plus |
h-RA | 2139 | CG6494-RA | 398..571 | 138..311 | 360 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8229835..8230502 | 898..231 | 3115 | 97.8 | Minus |
2R | 25286936 | 2R | 8231923..8232048 | 134..9 | 630 | 100 | Minus |
2R | 25286936 | 2R | 8231599..8231696 | 230..133 | 490 | 100 | Minus |
3L | 28110227 | 3L | 8677605..8677685 | 231..311 | 210 | 84 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:02:02 has no hits.
MXO01303.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:05 Download gff for
MXO01303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8704-PA | 1..890 | 9..898 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:22 Download gff for
MXO01303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-RA | 283..1172 | 9..898 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:56 Download gff for
MXO01303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpn-RA | 283..1172 | 9..898 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:56 Download gff for
MXO01303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8229835..8230502 | 231..898 | 97 | <- | Minus |
2R | 8231599..8231694 | 135..230 | 100 | <- | Minus |
2R | 8231923..8232048 | 9..134 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:22 Download gff for
MXO01303.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4119428..4119553 | 9..134 | 100 | | Minus |
arm_2R | 4117340..4118007 | 231..898 | 97 | <- | Minus |
arm_2R | 4119104..4119199 | 135..230 | 100 | <- | Minus |