Clone MXO01304 Report

Search the DGRC for MXO01304

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:4
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG17802-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01304.3prime Sequence

915 bp (832 high quality bases) assembled on 2007-03-15

> MXO01304.3prime
ATGGTCTAGAAAGCTTGCTTTATTTTTGGAATCAATTTCGGACTTAGCAC
TCATTGCGATCAGCTTATTTTGATGCTGCCTGGAGCGGTAGTGGGTCTTC
AAGTTCGAGTTCCGTGTAAAGGACACTTTGCAGACCTCACAGTGGAAGTT
ACGCTCGCCGGTGTGGACCACCTCGTGCTTGGCCCTCTGGTAGTTCGACT
CGTATCGCTTGTCGCAATAGTTGCACTTGAAGTTCTTTGGTGTTTTCTTG
TTCCGGTGTACCCGGTTTTCGTGGCGCGATCGCATAGTACTGTGCACAAA
ACGCTCGTCGCAGAACTGGCAAGCGTATGGCTTCTCTCCGCGGTGCTTCA
CCCGAATGTGAATGTTCAGGATGTACCTGTTGAACTCCTTTTGTCCGCAC
TCAGGACACTCGAAGGGCTTGACGCCCGAGTGGCGCAGCACGTGCAGATT
AAAGTTGCCCTTGTCGGTGAATTTCTTGCCGCAATGGTCACAGATGTGGA
CCTTTTGGCTTATGTATGTTTTTCGTTTTTTCTTCGCAGGTTTGAGAAAG
TCGGTGTCGTCGTTTTTGGGAGATGATCTCTTGGTGTATTTTCGACGAGG
CTTCTTATCTTCGTCAAGGGCCGATTGACGCGATGTGGCTTCTATATCTG
ACATAGAATCAGCATCTGTATCGCTGTCGCCGTCCTCGTTCTGCCAAAGC
TCGTCGTCGTCTTCCTGTGACTCCTCTTCGTCCTCCTCATTTTGCTGACT
TTCCTCCTCATCTGGCTGTGACTCCTCACATTCCTGTGACTCCTCGCCAT
CATCATGTCCTGTCTTTTTTATCACCATATCCTCATACTCCTGCTGTTGC
TCTTGCTCATCATCCTCCTTACTGAAGGGTATTTCGCAGGCAATATCTTC
AAAATTCCTTGTTCT

MXO01304.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-PA 1320 CG17802-RA 517..1317 819..19 4005 100 Minus
CG17802-PA 1320 CG17802-RA 433..513 903..823 405 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-RA 1706 CG17802-RA 503..1398 915..19 4415 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17804041..17804689 266..915 3155 99.4 Plus
3R 32079331 3R 17803533..17803656 19..142 620 100 Plus
3R 32079331 3R 17803856..17803978 143..265 615 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:19:28 has no hits.

MXO01304.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:05 Download gff for MXO01304.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-PA 422..1320 15..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:37 Download gff for MXO01304.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 503..1402 14..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:07 Download gff for MXO01304.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 503..1402 14..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:07 Download gff for MXO01304.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17803856..17803978 143..265 100 <- Plus
3R 17803529..17803656 14..142 98 <- Plus
3R 17804041..17804689 266..915 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:37 Download gff for MXO01304.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13629251..13629378 14..142 98 <- Plus
arm_3R 13629578..13629700 143..265 100 <- Plus
arm_3R 13629763..13630411 266..915 99   Plus

MXO01304.5prime Sequence

738 bp (693 high quality bases) assembled on 2007-03-15

> MXO01304.5prime
CAGTCGACATGACGCCACAATGCCGGTTGTGTGGAGATTTAATATACACG
CAAAATCCAGTTAACATATTCGATGAGAACAGCAAAATGGTCAGGCAAAT
CGCATTGGTCACGGGCCTTTGGCTCACCGACCACTCGAAGATGCCCCGGA
ATATGTGCTCCTGCTGCCTGCTGAGCCTGAAGAGCGCCATTGCCTTCCGG
CAAGCCTGCATCAAGACCAACAATCGACTGACAATCCAGCGCCGAAGTGT
GGAAGCCAAGGATGACGGATGCTGGGCTGATCCGCTGAGCGATGCGCACG
AGGGGCTGAAGATCAACGATGCGGAAGTGGAGCAGGAGGTGCTGTACGAG
GTGTCCTATGCGGATAATGAAGGACTGGAGGAATATTTCCCCCTCCCCCA
GAAGGAGGAGGAAGAAAGCGAGAAAAATGAGAACAAGGAATTTGAAGATA
TTGCCTGCGAAATACCCTTCAGTAAGGAGGATGATGAGCAAGAGCAACAG
CAGGAGTATGAGGATATGGTGGATAAAAAGACAGGACATGATGATGGCGA
GGAGTCACAGGAATGTGAGGAGTCACAGCCAGATGAGGAGGAAAGTCAGC
AAAATGAGGAGGACGAAGAGGAGTCACAGGAAGACGACGACGAGCTTTGG
CAGAACGAGGACGGCGACAGCGATACAGATGCTGATTCTATGTCAGATAT
AGAAGCCACATCGCGTCAATCGGCCCTTGACGAAGATA

MXO01304.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-PA 1320 CG17802-RA 1..375 9..383 1850 99.7 Plus
CG17802-PA 1320 CG17802-RA 418..730 426..738 1565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17802-RA 1706 CG17802-RA 82..811 9..738 3440 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17804381..17804997 738..122 2875 97.7 Minus
3R 32079331 3R 17805055..17805168 122..9 570 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:43:24 has no hits.

MXO01304.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:06 Download gff for MXO01304.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-PA 1..729 9..737 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:57 Download gff for MXO01304.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 82..810 9..737 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:08 Download gff for MXO01304.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17802-RA 82..810 9..737 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:08 Download gff for MXO01304.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17804382..17804996 123..737 97 <- Minus
3R 17805055..17805168 9..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:57 Download gff for MXO01304.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13630104..13630718 123..737 97 <- Minus
arm_3R 13630777..13630890 9..122 100   Minus