MXO01304.3prime Sequence
915 bp (832 high quality bases) assembled on 2007-03-15
> MXO01304.3prime
ATGGTCTAGAAAGCTTGCTTTATTTTTGGAATCAATTTCGGACTTAGCAC
TCATTGCGATCAGCTTATTTTGATGCTGCCTGGAGCGGTAGTGGGTCTTC
AAGTTCGAGTTCCGTGTAAAGGACACTTTGCAGACCTCACAGTGGAAGTT
ACGCTCGCCGGTGTGGACCACCTCGTGCTTGGCCCTCTGGTAGTTCGACT
CGTATCGCTTGTCGCAATAGTTGCACTTGAAGTTCTTTGGTGTTTTCTTG
TTCCGGTGTACCCGGTTTTCGTGGCGCGATCGCATAGTACTGTGCACAAA
ACGCTCGTCGCAGAACTGGCAAGCGTATGGCTTCTCTCCGCGGTGCTTCA
CCCGAATGTGAATGTTCAGGATGTACCTGTTGAACTCCTTTTGTCCGCAC
TCAGGACACTCGAAGGGCTTGACGCCCGAGTGGCGCAGCACGTGCAGATT
AAAGTTGCCCTTGTCGGTGAATTTCTTGCCGCAATGGTCACAGATGTGGA
CCTTTTGGCTTATGTATGTTTTTCGTTTTTTCTTCGCAGGTTTGAGAAAG
TCGGTGTCGTCGTTTTTGGGAGATGATCTCTTGGTGTATTTTCGACGAGG
CTTCTTATCTTCGTCAAGGGCCGATTGACGCGATGTGGCTTCTATATCTG
ACATAGAATCAGCATCTGTATCGCTGTCGCCGTCCTCGTTCTGCCAAAGC
TCGTCGTCGTCTTCCTGTGACTCCTCTTCGTCCTCCTCATTTTGCTGACT
TTCCTCCTCATCTGGCTGTGACTCCTCACATTCCTGTGACTCCTCGCCAT
CATCATGTCCTGTCTTTTTTATCACCATATCCTCATACTCCTGCTGTTGC
TCTTGCTCATCATCCTCCTTACTGAAGGGTATTTCGCAGGCAATATCTTC
AAAATTCCTTGTTCT
MXO01304.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-PA | 1320 | CG17802-RA | 517..1317 | 819..19 | 4005 | 100 | Minus |
CG17802-PA | 1320 | CG17802-RA | 433..513 | 903..823 | 405 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-RA | 1706 | CG17802-RA | 503..1398 | 915..19 | 4415 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17804041..17804689 | 266..915 | 3155 | 99.4 | Plus |
3R | 32079331 | 3R | 17803533..17803656 | 19..142 | 620 | 100 | Plus |
3R | 32079331 | 3R | 17803856..17803978 | 143..265 | 615 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:19:28 has no hits.
MXO01304.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:05 Download gff for
MXO01304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-PA | 422..1320 | 15..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:37 Download gff for
MXO01304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 503..1402 | 14..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:07 Download gff for
MXO01304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 503..1402 | 14..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:07 Download gff for
MXO01304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17803856..17803978 | 143..265 | 100 | <- | Plus |
3R | 17803529..17803656 | 14..142 | 98 | <- | Plus |
3R | 17804041..17804689 | 266..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:37 Download gff for
MXO01304.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13629251..13629378 | 14..142 | 98 | <- | Plus |
arm_3R | 13629578..13629700 | 143..265 | 100 | <- | Plus |
arm_3R | 13629763..13630411 | 266..915 | 99 | | Plus |
MXO01304.5prime Sequence
738 bp (693 high quality bases) assembled on 2007-03-15
> MXO01304.5prime
CAGTCGACATGACGCCACAATGCCGGTTGTGTGGAGATTTAATATACACG
CAAAATCCAGTTAACATATTCGATGAGAACAGCAAAATGGTCAGGCAAAT
CGCATTGGTCACGGGCCTTTGGCTCACCGACCACTCGAAGATGCCCCGGA
ATATGTGCTCCTGCTGCCTGCTGAGCCTGAAGAGCGCCATTGCCTTCCGG
CAAGCCTGCATCAAGACCAACAATCGACTGACAATCCAGCGCCGAAGTGT
GGAAGCCAAGGATGACGGATGCTGGGCTGATCCGCTGAGCGATGCGCACG
AGGGGCTGAAGATCAACGATGCGGAAGTGGAGCAGGAGGTGCTGTACGAG
GTGTCCTATGCGGATAATGAAGGACTGGAGGAATATTTCCCCCTCCCCCA
GAAGGAGGAGGAAGAAAGCGAGAAAAATGAGAACAAGGAATTTGAAGATA
TTGCCTGCGAAATACCCTTCAGTAAGGAGGATGATGAGCAAGAGCAACAG
CAGGAGTATGAGGATATGGTGGATAAAAAGACAGGACATGATGATGGCGA
GGAGTCACAGGAATGTGAGGAGTCACAGCCAGATGAGGAGGAAAGTCAGC
AAAATGAGGAGGACGAAGAGGAGTCACAGGAAGACGACGACGAGCTTTGG
CAGAACGAGGACGGCGACAGCGATACAGATGCTGATTCTATGTCAGATAT
AGAAGCCACATCGCGTCAATCGGCCCTTGACGAAGATA
MXO01304.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-PA | 1320 | CG17802-RA | 1..375 | 9..383 | 1850 | 99.7 | Plus |
CG17802-PA | 1320 | CG17802-RA | 418..730 | 426..738 | 1565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17802-RA | 1706 | CG17802-RA | 82..811 | 9..738 | 3440 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17804381..17804997 | 738..122 | 2875 | 97.7 | Minus |
3R | 32079331 | 3R | 17805055..17805168 | 122..9 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:43:24 has no hits.
MXO01304.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:06 Download gff for
MXO01304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-PA | 1..729 | 9..737 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:57 Download gff for
MXO01304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 82..810 | 9..737 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:08 Download gff for
MXO01304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17802-RA | 82..810 | 9..737 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:08 Download gff for
MXO01304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17804382..17804996 | 123..737 | 97 | <- | Minus |
3R | 17805055..17805168 | 9..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:57 Download gff for
MXO01304.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13630104..13630718 | 123..737 | 97 | <- | Minus |
arm_3R | 13630777..13630890 | 9..122 | 100 | | Minus |