MXO01305.3prime Sequence
864 bp (814 high quality bases) assembled on 2007-03-15
> MXO01305.3prime
ATGGTCTAGAAAGCTTGCCAGCGAGTGTTCGTTGGTGTTGAGGAAGCTGC
GGCAGACGCGGCTCACTTCGGGATTGGCGTGGTTCATTAGCTGCATGTAG
ATCTGCTTGTGTAGCTGCAGCTCGTTGGTCATCTCACCAAGCTGCCGAAT
GAGGGCGTCCTTCTCCTTGAGCAGGCTCTTCACGCGCTCCTCCACCTCGC
GGGAGCGCACCTTAGCCTTCTCCCGGCTCTTGCGCACCGCTATGTTGTTC
CGCTCCCGCCGCCTGCGGTACTCATCCGTGCCCTTGTCCACATGCTTGTT
GCTGTGCTTGCGGTGCTGCTGCTGTTGCTGGTGCTGCTGATGCTGCTGCT
GCGCGTGCAGCTTGCTGTGCTGCTTGAGCTTATTGCCCCCCCCTGCTGCG
GCCGCCAGGTGGGGCAGGATGTGGTGCGCCAGGACGTTGGCCGTCGTCAG
GTTGGTGAACTGGCTGCCGTTGCTGCTGCCCGTGCTGCCGTTGCTCCCGT
TGCTGCTGGGCGTGGTGTTGCCTCCGTTGAGTGGGTTTCCGCCCCCGGTC
AAGCCATTCGCCCCCGATCCGTAGCCGTTGTACAGGCCTGCTCCATTGCC
CATGAAGGCGGCCTGCTGGCTAGCCGCCTCCTGCAGGTGCCGCCTGTACT
CGGGGTCGATGGGCTCCTCCTTGATCGTGCTGGAGTCGGAGCCCACGGAG
CTGTTCTCGTCGCTGGAATTGTTGTAGGTGGCGTGCACGGGCTGCGGCAT
GTAGGCCAGGGCGCCTCCTGCTCCGCCACCGCCTCCCCTGCCCCCGTAGC
CGTGCTGGTTCCGCAGGGTCTGCTGCTGCAGGACCTTCGCCGCCGCCGAG
ACCATTCCGCTCGG
MXO01305.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4354-PA | 1350 | slbo-RA | 502..974 | 864..392 | 2340 | 99.7 | Minus |
CG4354-PA | 1350 | slbo-RA | 987..1347 | 379..19 | 1805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slbo-RB | 2581 | CG4354-RB | 834..1679 | 864..19 | 4110 | 99.1 | Minus |
slbo-RA | 2786 | CG4354-RA | 1039..1884 | 864..19 | 4110 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24332424..24333269 | 19..864 | 4110 | 99.1 | Plus |
Blast to na_te.dros performed 2014-11-28 23:19:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 3109..3195 | 709..623 | 111 | 58.6 | Minus |
MXO01305.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:06 Download gff for
MXO01305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4354-PA | 502..1350 | 18..864 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:42 Download gff for
MXO01305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-RA | 1039..1888 | 13..864 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:11 Download gff for
MXO01305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-RA | 1039..1888 | 13..864 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:11 Download gff for
MXO01305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24332420..24333269 | 13..864 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:42 Download gff for
MXO01305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20219943..20220792 | 13..864 | 98 | | Plus |
MXO01305.5prime Sequence
851 bp (705 high quality bases) assembled on 2007-03-15
> MXO01305.5prime
CAGTCGACATGCTGAACATGGAGTCCCCGCAGATGTACGCCGATGCCGTT
CAGACATTGGCCCAGCTGGACCTCAAGAAGGAGCCTCCCCTGCAGCAGGC
CACCATTGGCCAGATCACACTGACGGCCATGTCCACGGCGCAGCAGCAGC
AGCAACAACAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAACAG
CAGCAGCAGCAACCCCAGCAGCAGACTACCGATGCGAACAACAACACGTC
GCAGGACGCGGCACTCCTGGTCAAGCAGCACGCCATGCACCAGATGCAAC
AGGTCGCCGCATTGGGCAGCAACAACAACCTGTTGCAGAAGCAGATGCTG
CAGCAGTACTCCACTCAGACGGACCTGGACGAGTTGTTTTCCCCCCCCCC
CCCGCTCGACCTGCAGCACCTGAAAAACAAAGAGGTCAGGGACACGGAAA
CGCTGGGCATCTTCAGCGACATGGTGACCAGTCCGGGCGGACTCTCGGCC
ACCCTGCCGCCGAGCGGAATGGTCTCGGCGGCGGCGAAGGTCCTGCAGCA
GCAGACCCTGCGGAACCAGCACGGCTACGGGGGCAGGGGAGGCGGTGGCG
GAGCAGGAGGCGCCCTGGCCTACATGCCGCAGCCCGTGCACGCCACCTAC
AACAATTCCAGCGACGAGAACAGCTCCGTGGGCTCCGACTCCAGCACGAT
CAAGGAGGAGCCCATCGACCCCGAGTACAGGCGGCACCTGCAGGAGGCGG
CTAGCCAGCAGGCCGCCTTCATGGGCAATGGAGCAGGCCTGTACAACGGC
TACGGATCGGGGGCGAATGGCTTGACCGGGGGCGGACACCCACTCAACGG
A
MXO01305.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4354-PA | 1350 | slbo-RA | 428..843 | 436..851 | 2055 | 99.7 | Plus |
CG4354-PA | 1350 | slbo-RA | 1..375 | 9..383 | 1825 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
slbo-RB | 2581 | CG4354-RB | 333..1175 | 9..851 | 3885 | 97.4 | Plus |
slbo-RA | 2786 | CG4354-RA | 538..1380 | 9..851 | 3885 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24332928..24333770 | 851..9 | 3885 | 97.4 | Minus |
Blast to na_te.dros performed 2014-11-28 22:12:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 3109..3195 | 665..751 | 111 | 58.6 | Plus |
MXO01305.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:06 Download gff for
MXO01305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4354-PA | 1..842 | 9..850 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:42 Download gff for
MXO01305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-RA | 538..1379 | 9..850 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:30 Download gff for
MXO01305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
slbo-RA | 538..1379 | 9..850 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:30 Download gff for
MXO01305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24332929..24333770 | 9..850 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:42 Download gff for
MXO01305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20220452..20221293 | 9..850 | 97 | | Minus |