Clone MXO01305 Report

Search the DGRC for MXO01305

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:5
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptslbo-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01305.3prime Sequence

864 bp (814 high quality bases) assembled on 2007-03-15

> MXO01305.3prime
ATGGTCTAGAAAGCTTGCCAGCGAGTGTTCGTTGGTGTTGAGGAAGCTGC
GGCAGACGCGGCTCACTTCGGGATTGGCGTGGTTCATTAGCTGCATGTAG
ATCTGCTTGTGTAGCTGCAGCTCGTTGGTCATCTCACCAAGCTGCCGAAT
GAGGGCGTCCTTCTCCTTGAGCAGGCTCTTCACGCGCTCCTCCACCTCGC
GGGAGCGCACCTTAGCCTTCTCCCGGCTCTTGCGCACCGCTATGTTGTTC
CGCTCCCGCCGCCTGCGGTACTCATCCGTGCCCTTGTCCACATGCTTGTT
GCTGTGCTTGCGGTGCTGCTGCTGTTGCTGGTGCTGCTGATGCTGCTGCT
GCGCGTGCAGCTTGCTGTGCTGCTTGAGCTTATTGCCCCCCCCTGCTGCG
GCCGCCAGGTGGGGCAGGATGTGGTGCGCCAGGACGTTGGCCGTCGTCAG
GTTGGTGAACTGGCTGCCGTTGCTGCTGCCCGTGCTGCCGTTGCTCCCGT
TGCTGCTGGGCGTGGTGTTGCCTCCGTTGAGTGGGTTTCCGCCCCCGGTC
AAGCCATTCGCCCCCGATCCGTAGCCGTTGTACAGGCCTGCTCCATTGCC
CATGAAGGCGGCCTGCTGGCTAGCCGCCTCCTGCAGGTGCCGCCTGTACT
CGGGGTCGATGGGCTCCTCCTTGATCGTGCTGGAGTCGGAGCCCACGGAG
CTGTTCTCGTCGCTGGAATTGTTGTAGGTGGCGTGCACGGGCTGCGGCAT
GTAGGCCAGGGCGCCTCCTGCTCCGCCACCGCCTCCCCTGCCCCCGTAGC
CGTGCTGGTTCCGCAGGGTCTGCTGCTGCAGGACCTTCGCCGCCGCCGAG
ACCATTCCGCTCGG

MXO01305.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4354-PA 1350 slbo-RA 502..974 864..392 2340 99.7 Minus
CG4354-PA 1350 slbo-RA 987..1347 379..19 1805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
slbo-RB 2581 CG4354-RB 834..1679 864..19 4110 99.1 Minus
slbo-RA 2786 CG4354-RA 1039..1884 864..19 4110 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24332424..24333269 19..864 4110 99.1 Plus
Blast to na_te.dros performed 2014-11-28 23:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 3109..3195 709..623 111 58.6 Minus

MXO01305.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:06 Download gff for MXO01305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4354-PA 502..1350 18..864 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:42 Download gff for MXO01305.3prime
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 1039..1888 13..864 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:07:11 Download gff for MXO01305.3prime
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 1039..1888 13..864 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:07:11 Download gff for MXO01305.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24332420..24333269 13..864 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:42 Download gff for MXO01305.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20219943..20220792 13..864 98   Plus

MXO01305.5prime Sequence

851 bp (705 high quality bases) assembled on 2007-03-15

> MXO01305.5prime
CAGTCGACATGCTGAACATGGAGTCCCCGCAGATGTACGCCGATGCCGTT
CAGACATTGGCCCAGCTGGACCTCAAGAAGGAGCCTCCCCTGCAGCAGGC
CACCATTGGCCAGATCACACTGACGGCCATGTCCACGGCGCAGCAGCAGC
AGCAACAACAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAACAACAG
CAGCAGCAGCAACCCCAGCAGCAGACTACCGATGCGAACAACAACACGTC
GCAGGACGCGGCACTCCTGGTCAAGCAGCACGCCATGCACCAGATGCAAC
AGGTCGCCGCATTGGGCAGCAACAACAACCTGTTGCAGAAGCAGATGCTG
CAGCAGTACTCCACTCAGACGGACCTGGACGAGTTGTTTTCCCCCCCCCC
CCCGCTCGACCTGCAGCACCTGAAAAACAAAGAGGTCAGGGACACGGAAA
CGCTGGGCATCTTCAGCGACATGGTGACCAGTCCGGGCGGACTCTCGGCC
ACCCTGCCGCCGAGCGGAATGGTCTCGGCGGCGGCGAAGGTCCTGCAGCA
GCAGACCCTGCGGAACCAGCACGGCTACGGGGGCAGGGGAGGCGGTGGCG
GAGCAGGAGGCGCCCTGGCCTACATGCCGCAGCCCGTGCACGCCACCTAC
AACAATTCCAGCGACGAGAACAGCTCCGTGGGCTCCGACTCCAGCACGAT
CAAGGAGGAGCCCATCGACCCCGAGTACAGGCGGCACCTGCAGGAGGCGG
CTAGCCAGCAGGCCGCCTTCATGGGCAATGGAGCAGGCCTGTACAACGGC
TACGGATCGGGGGCGAATGGCTTGACCGGGGGCGGACACCCACTCAACGG
A

MXO01305.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4354-PA 1350 slbo-RA 428..843 436..851 2055 99.7 Plus
CG4354-PA 1350 slbo-RA 1..375 9..383 1825 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
slbo-RB 2581 CG4354-RB 333..1175 9..851 3885 97.4 Plus
slbo-RA 2786 CG4354-RA 538..1380 9..851 3885 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24332928..24333770 851..9 3885 97.4 Minus
Blast to na_te.dros performed 2014-11-28 22:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 3109..3195 665..751 111 58.6 Plus

MXO01305.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:06 Download gff for MXO01305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4354-PA 1..842 9..850 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:42 Download gff for MXO01305.5prime
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 538..1379 9..850 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:30 Download gff for MXO01305.5prime
Subject Subject Range Query Range Percent Splice Strand
slbo-RA 538..1379 9..850 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:30 Download gff for MXO01305.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24332929..24333770 9..850 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:42 Download gff for MXO01305.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20220452..20221293 9..850 97   Minus