MXO01306.3prime Sequence
830 bp (778 high quality bases) assembled on 2007-03-15
> MXO01306.3prime
ATGGTCTAGAAAGCTTGCTTTCTTTTCGTTGTCAATTTTACTTTTGTCCA
ACGACGACGACACCATCCCTCCGCCGTTCGAAGGGTACAGCTTTTCCAAG
TAGTTTAATGACTCGTTTAAAAATGTCTGAAAAGCGTGCAGAACAGCCAT
AATCGCGGGCGATCCGAATCCGTGCGTTATCAGGGAGAAGTGCGTCAAGT
GGCGCTGCATCGATGGTTCCAGCAGATGCTGTGATCTCGTCCCAAAGTGG
GTCGTTCGATCTTGGCTCAGGATCTGCATAAGCTCTTTTGTTATCTGCTG
GGAGTGGAGAATGAGCTCTTTTCGACGGTACGAGTCCTGCGGCTCCGTTT
GGTGGCGCACGATGTACTCGGCCAGCTGCCTGTCGGCCCCCCCGGTTTCG
CAAACGAAGTGAAAGTCCTTGGACAGGTGCGTTGCCTCCCCCTCAACCAA
GGATGTCAGTAGGGTGACGTTGGCCGCTTTCCGTCTACCGGCGGGTAGAT
TGAGGCCGATCTTTTCCAGCTTCTCCCTCAACAGGCGACCTCCGTTCTTG
CTCTTAGCCCTTCGGAGCACTCCGCCCAGCAGGGAGGCGTTCAAGCACTC
GGGCGGCGAGAGTCGACGCTGTACTTCGGCTATGGTGACCTTGTATTTCG
AGGTGCTCGATAGGAGACTGAGGCGACCAGGAACTGCACAGAATACCTCG
CTGGGCGAACCCGATCCAATGTTCCCGGCTTCTTTTCCGCTTTTCATGCT
CTTTATGAGCGGCAAGTCTGACATGAACGCCACATTGTCGTCGAGGGCAG
GAGCTTGGACATCATCGACGGCGTTTTGAA
MXO01306.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7807-PB | 1398 | AP-2-RB | 584..1021 | 830..393 | 2165 | 99.7 | Minus |
CG7807-PA | 1386 | AP-2-RA | 572..1009 | 830..393 | 2165 | 99.7 | Minus |
CG7807-PB | 1398 | AP-2-RB | 1032..1395 | 382..19 | 1820 | 100 | Minus |
CG7807-PA | 1386 | AP-2-RA | 1020..1383 | 382..19 | 1820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfAP-2-RF | 1823 | CG7807-RF | 614..1425 | 830..19 | 3940 | 99 | Minus |
TfAP-2-RE | 2012 | CG7807-RE | 803..1614 | 830..19 | 3940 | 99 | Minus |
TfAP-2-RD | 2237 | CG7807-RD | 1028..1839 | 830..19 | 3940 | 99 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21612243..21612509 | 561..295 | 1215 | 97 | Minus |
3L | 28110227 | 3L | 21611995..21612185 | 749..559 | 955 | 100 | Minus |
3L | 28110227 | 3L | 21612610..21612780 | 297..127 | 855 | 100 | Minus |
3L | 28110227 | 3L | 21612841..21612951 | 129..19 | 555 | 100 | Minus |
3L | 28110227 | 3L | 21611270..21611351 | 830..749 | 410 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:11:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X-element | 4740 | X-element ROXELEMENT 4740bp | 930..1003 | 563..492 | 112 | 64.9 | Minus |
MXO01306.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:07 Download gff for
MXO01306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7807-PA | 574..1386 | 16..828 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:34 Download gff for
MXO01306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RD | 1028..1839 | 19..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:25 Download gff for
MXO01306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RD | 1028..1839 | 19..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:25 Download gff for
MXO01306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21611270..21611350 | 750..830 | 100 | -> | Minus |
3L | 21611995..21612184 | 560..749 | 100 | -> | Minus |
3L | 21612245..21612509 | 295..559 | 96 | -> | Minus |
3L | 21612613..21612780 | 127..294 | 100 | -> | Minus |
3L | 21612844..21612951 | 19..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:34 Download gff for
MXO01306.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21604370..21604450 | 750..830 | 100 | -> | Minus |
arm_3L | 21605095..21605284 | 560..749 | 100 | -> | Minus |
arm_3L | 21605345..21605609 | 295..559 | 96 | -> | Minus |
arm_3L | 21605713..21605880 | 127..294 | 100 | -> | Minus |
arm_3L | 21605944..21606051 | 19..126 | 100 | | Minus |
MXO01306.5prime Sequence
867 bp (683 high quality bases) assembled on 2007-03-15
> MXO01306.5prime
CAGTCGACATGCACATTCTACACCGCCCCAACGACCATCAGTTCGAGGAT
CAGAAGTTCATGATGGAACGCCTCAGTGGACATGGGAGTCTAGGGCTGTC
CAGCGGCAGTGCGGCGTACACAACGCATTCCGGCGGCCACACGGGACGCA
GCGGACCGGCCACGGGGCACAGTGGGCACAGCAGCACCCATGGATCGGCG
GCCACCATGCACCACCAGTCGCTGCAGTCCGACTTCCAGCCGCCGTACTT
CCCGCCCCCCTTCCACCACTCCACCCAGAGTCCTCCCCAGCAACAGAACC
ATGGAGCCCTCGAGTACTTGGGCACGGATCCGTATGGCCAGCCCCTCTCC
TCGCTTCACCACGCCCCACTGCACCACTACAACCTTTTTTCCCCCCCCCC
CTCCACGCAGGACCAACTGGGAATAAAAAGGACCCACAGAGAGGCTGAGC
TGCAGGGACATGTCACCCAATTGTCACATGGATTTCCGTACACGGATAGG
AGGAGCGATTACGGCAGTGCAATATCCGCGGGAGCTGCCCACGGAACGAG
ACTTGGCCACGAGCACGAGTCCCTGGCGCTGCACCAAGCCCTTCAAAACG
CCGTCGATGATGTCCAAGCTCCTGCCCTCGACGACAATGTGGCGTTCATG
TCAGACTTGCCGCTCATAAAGAGCATGAAAAGCGGAAAAGAAGCCGGGAA
CATTGGATCGGGTTCGCCCAGCGAGGTATTCTGTGCAGTTCCTGGTCGCC
TCAGTCTCCTATCGAGCACCTCGAAATACAAGGTCACCATAGCCGAAGTA
CAGCGTCGACTCTCGCCGCCCGAGTGCTTGAACGCCTCCCTGCTGGGCGG
AGTGCTCCGAAGGGCTA
MXO01306.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7807-PB | 1398 | AP-2-RB | 421..859 | 429..867 | 2195 | 100 | Plus |
CG7807-PA | 1386 | AP-2-RA | 409..847 | 429..867 | 2195 | 100 | Plus |
CG7807-PB | 1398 | AP-2-RB | 1..376 | 9..384 | 1855 | 99.7 | Plus |
CG7807-PA | 1386 | AP-2-RA | 45..364 | 65..384 | 1600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TfAP-2-RB | 2219 | CG7807-RB | 425..1285 | 7..867 | 4020 | 97.8 | Plus |
TfAP-2-RD | 2237 | CG7807-RD | 425..1303 | 7..867 | 3830 | 95.8 | Plus |
TfAP-2-RC | 1805 | CG7807-RC | 69..871 | 65..867 | 3745 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21609418..21609649 | 65..296 | 1160 | 100 | Plus |
3L | 28110227 | 3L | 21611143..21611351 | 465..673 | 1045 | 100 | Plus |
3L | 28110227 | 3L | 21611995..21612185 | 673..863 | 955 | 100 | Plus |
3L | 28110227 | 3L | 21609716..21609886 | 294..464 | 585 | 89.5 | Plus |
3L | 28110227 | 3L | 21599280..21599339 | 7..66 | 285 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:02 has no hits.
MXO01306.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:07 Download gff for
MXO01306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7807-PA | 40..846 | 56..866 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:59 Download gff for
MXO01306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RB | 420..1284 | 1..866 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:18 Download gff for
MXO01306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TfAP-2-RB | 420..1284 | 1..866 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:18 Download gff for
MXO01306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21599275..21599338 | 1..65 | 93 | -> | Plus |
3L | 21609419..21609649 | 66..296 | 100 | -> | Plus |
3L | 21609719..21609886 | 297..464 | 89 | -> | Plus |
3L | 21611143..21611350 | 465..672 | 100 | -> | Plus |
3L | 21611995..21612186 | 673..866 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:59 Download gff for
MXO01306.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21592375..21592438 | 1..65 | 93 | -> | Plus |
arm_3L | 21602519..21602749 | 66..296 | 100 | -> | Plus |
arm_3L | 21602819..21602986 | 297..464 | 89 | -> | Plus |
arm_3L | 21604243..21604450 | 465..672 | 100 | -> | Plus |
arm_3L | 21605095..21605286 | 673..866 | 98 | | Plus |