Clone MXO01306 Report

Search the DGRC for MXO01306

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:13
Well:6
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptAP-2-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO01306.3prime Sequence

830 bp (778 high quality bases) assembled on 2007-03-15

> MXO01306.3prime
ATGGTCTAGAAAGCTTGCTTTCTTTTCGTTGTCAATTTTACTTTTGTCCA
ACGACGACGACACCATCCCTCCGCCGTTCGAAGGGTACAGCTTTTCCAAG
TAGTTTAATGACTCGTTTAAAAATGTCTGAAAAGCGTGCAGAACAGCCAT
AATCGCGGGCGATCCGAATCCGTGCGTTATCAGGGAGAAGTGCGTCAAGT
GGCGCTGCATCGATGGTTCCAGCAGATGCTGTGATCTCGTCCCAAAGTGG
GTCGTTCGATCTTGGCTCAGGATCTGCATAAGCTCTTTTGTTATCTGCTG
GGAGTGGAGAATGAGCTCTTTTCGACGGTACGAGTCCTGCGGCTCCGTTT
GGTGGCGCACGATGTACTCGGCCAGCTGCCTGTCGGCCCCCCCGGTTTCG
CAAACGAAGTGAAAGTCCTTGGACAGGTGCGTTGCCTCCCCCTCAACCAA
GGATGTCAGTAGGGTGACGTTGGCCGCTTTCCGTCTACCGGCGGGTAGAT
TGAGGCCGATCTTTTCCAGCTTCTCCCTCAACAGGCGACCTCCGTTCTTG
CTCTTAGCCCTTCGGAGCACTCCGCCCAGCAGGGAGGCGTTCAAGCACTC
GGGCGGCGAGAGTCGACGCTGTACTTCGGCTATGGTGACCTTGTATTTCG
AGGTGCTCGATAGGAGACTGAGGCGACCAGGAACTGCACAGAATACCTCG
CTGGGCGAACCCGATCCAATGTTCCCGGCTTCTTTTCCGCTTTTCATGCT
CTTTATGAGCGGCAAGTCTGACATGAACGCCACATTGTCGTCGAGGGCAG
GAGCTTGGACATCATCGACGGCGTTTTGAA

MXO01306.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7807-PB 1398 AP-2-RB 584..1021 830..393 2165 99.7 Minus
CG7807-PA 1386 AP-2-RA 572..1009 830..393 2165 99.7 Minus
CG7807-PB 1398 AP-2-RB 1032..1395 382..19 1820 100 Minus
CG7807-PA 1386 AP-2-RA 1020..1383 382..19 1820 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
TfAP-2-RF 1823 CG7807-RF 614..1425 830..19 3940 99 Minus
TfAP-2-RE 2012 CG7807-RE 803..1614 830..19 3940 99 Minus
TfAP-2-RD 2237 CG7807-RD 1028..1839 830..19 3940 99 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21612243..21612509 561..295 1215 97 Minus
3L 28110227 3L 21611995..21612185 749..559 955 100 Minus
3L 28110227 3L 21612610..21612780 297..127 855 100 Minus
3L 28110227 3L 21612841..21612951 129..19 555 100 Minus
3L 28110227 3L 21611270..21611351 830..749 410 100 Minus
Blast to na_te.dros performed 2014-11-28 20:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
X-element 4740 X-element ROXELEMENT 4740bp 930..1003 563..492 112 64.9 Minus

MXO01306.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:07 Download gff for MXO01306.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7807-PA 574..1386 16..828 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:34 Download gff for MXO01306.3prime
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RD 1028..1839 19..830 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:25 Download gff for MXO01306.3prime
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RD 1028..1839 19..830 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:25 Download gff for MXO01306.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21611270..21611350 750..830 100 -> Minus
3L 21611995..21612184 560..749 100 -> Minus
3L 21612245..21612509 295..559 96 -> Minus
3L 21612613..21612780 127..294 100 -> Minus
3L 21612844..21612951 19..126 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:34 Download gff for MXO01306.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21604370..21604450 750..830 100 -> Minus
arm_3L 21605095..21605284 560..749 100 -> Minus
arm_3L 21605345..21605609 295..559 96 -> Minus
arm_3L 21605713..21605880 127..294 100 -> Minus
arm_3L 21605944..21606051 19..126 100   Minus

MXO01306.5prime Sequence

867 bp (683 high quality bases) assembled on 2007-03-15

> MXO01306.5prime
CAGTCGACATGCACATTCTACACCGCCCCAACGACCATCAGTTCGAGGAT
CAGAAGTTCATGATGGAACGCCTCAGTGGACATGGGAGTCTAGGGCTGTC
CAGCGGCAGTGCGGCGTACACAACGCATTCCGGCGGCCACACGGGACGCA
GCGGACCGGCCACGGGGCACAGTGGGCACAGCAGCACCCATGGATCGGCG
GCCACCATGCACCACCAGTCGCTGCAGTCCGACTTCCAGCCGCCGTACTT
CCCGCCCCCCTTCCACCACTCCACCCAGAGTCCTCCCCAGCAACAGAACC
ATGGAGCCCTCGAGTACTTGGGCACGGATCCGTATGGCCAGCCCCTCTCC
TCGCTTCACCACGCCCCACTGCACCACTACAACCTTTTTTCCCCCCCCCC
CTCCACGCAGGACCAACTGGGAATAAAAAGGACCCACAGAGAGGCTGAGC
TGCAGGGACATGTCACCCAATTGTCACATGGATTTCCGTACACGGATAGG
AGGAGCGATTACGGCAGTGCAATATCCGCGGGAGCTGCCCACGGAACGAG
ACTTGGCCACGAGCACGAGTCCCTGGCGCTGCACCAAGCCCTTCAAAACG
CCGTCGATGATGTCCAAGCTCCTGCCCTCGACGACAATGTGGCGTTCATG
TCAGACTTGCCGCTCATAAAGAGCATGAAAAGCGGAAAAGAAGCCGGGAA
CATTGGATCGGGTTCGCCCAGCGAGGTATTCTGTGCAGTTCCTGGTCGCC
TCAGTCTCCTATCGAGCACCTCGAAATACAAGGTCACCATAGCCGAAGTA
CAGCGTCGACTCTCGCCGCCCGAGTGCTTGAACGCCTCCCTGCTGGGCGG
AGTGCTCCGAAGGGCTA

MXO01306.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7807-PB 1398 AP-2-RB 421..859 429..867 2195 100 Plus
CG7807-PA 1386 AP-2-RA 409..847 429..867 2195 100 Plus
CG7807-PB 1398 AP-2-RB 1..376 9..384 1855 99.7 Plus
CG7807-PA 1386 AP-2-RA 45..364 65..384 1600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
TfAP-2-RB 2219 CG7807-RB 425..1285 7..867 4020 97.8 Plus
TfAP-2-RD 2237 CG7807-RD 425..1303 7..867 3830 95.8 Plus
TfAP-2-RC 1805 CG7807-RC 69..871 65..867 3745 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21609418..21609649 65..296 1160 100 Plus
3L 28110227 3L 21611143..21611351 465..673 1045 100 Plus
3L 28110227 3L 21611995..21612185 673..863 955 100 Plus
3L 28110227 3L 21609716..21609886 294..464 585 89.5 Plus
3L 28110227 3L 21599280..21599339 7..66 285 98.3 Plus
Blast to na_te.dros performed on 2014-11-28 19:29:02 has no hits.

MXO01306.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:07 Download gff for MXO01306.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7807-PA 40..846 56..866 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:59 Download gff for MXO01306.5prime
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RB 420..1284 1..866 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:18 Download gff for MXO01306.5prime
Subject Subject Range Query Range Percent Splice Strand
TfAP-2-RB 420..1284 1..866 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:18 Download gff for MXO01306.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21599275..21599338 1..65 93 -> Plus
3L 21609419..21609649 66..296 100 -> Plus
3L 21609719..21609886 297..464 89 -> Plus
3L 21611143..21611350 465..672 100 -> Plus
3L 21611995..21612186 673..866 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:59 Download gff for MXO01306.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21592375..21592438 1..65 93 -> Plus
arm_3L 21602519..21602749 66..296 100 -> Plus
arm_3L 21602819..21602986 297..464 89 -> Plus
arm_3L 21604243..21604450 465..672 100 -> Plus
arm_3L 21605095..21605286 673..866 98   Plus