MXO01307.3prime Sequence
937 bp (746 high quality bases) assembled on 2007-03-15
> MXO01307.3prime
ATGGTCTAGAAAGCTTGCCAGCTCCTCTGCTAGGCTGGGCAGGGAGATTA
CCACTTCACCCATCAGCTGCGCCTCGTTCGGATCATTCGAGACGATGATG
CGCTCGAACTCGGTATTTGTGGGATCCACGATCTCGTAGCAGGATCCTGT
GCCCGGTTTCGCTAGCGAGTCGTTCACCTGCGGCGACAGTATTTGCTGGG
TCACCTCCAAGCTCTCGAGGCGCGTCGTCTCGAGGCGGTAGAACCCGTTC
TCGTCCACCCGGTAGGTGAATCTTTTGTGGCCCGAAGGCAGGCGGAAGCC
GTGCTTCTTCATAAGGTGAGCGGAGAGCGACTTGCCGCTCTTGAAGAAGC
GCTCGCAGCAGTGGCAGGCGTACAGAATGGGATTGTTGCCCCGCACCTCG
AGGAAGTGCCGTCGCATCTGCGTGTAGGTGCGTACAGAATAATGACAGTC
GGGATGCTCGCACTGGTGCACCGTCTTCGAGTGGACAATCTGAACGTGCT
TGGCCAGATCCGACTCCCGAACGCAGCGCGTGTCACACTCACTACACTTG
AGCGGTTTGTCCTTGAGGTGGCGGTACCGAATGTGGGTGGTCAGCGAGCT
GGCCGAGCTGCAGGTCATGTCGCACATGGTGCACTTGTAGCAGTTAACGT
GTCGCACCACGTGGCTCTTCAGCAGCTTCTTGGTGGCAAAGAACTTGAAG
CATTGGGCGCACTGGAAGCTGTTTGTGTTGTTTTCCGGCTGGCGTCTAAG
GTGATCAAAGAGCGTAGTCTTGGTGCGGAACAGTTCGCCGCAGTGGAAGC
AAGCCACCTGCTTCTTGTTGGAGTGGGTACTGATGTGCTCGATGAGGCGG
TACTTGTTGCCCATGTGCTTGTGGCACATGGCCCAGTTGCACATCGTCTT
GGGCCGCTCGTCTTCCGGCGTCTTCTGTATGTCGTAC
MXO01307.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17829-PA | 1404 | CG17829-RA | 483..1401 | 937..19 | 4545 | 99.7 | Minus |
| CG17829-PC | 1347 | CG17829-RC | 426..1344 | 937..19 | 4545 | 99.7 | Minus |
| CG17829-PB | 1404 | CG17829-RB | 483..1401 | 937..19 | 4545 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17829-RB | 2197 | CG17829-RB | 551..1469 | 937..19 | 4565 | 99.8 | Minus |
| CG17829-RC | 2199 | CG17829-RC | 553..1471 | 937..19 | 4565 | 99.8 | Minus |
| CG17829-RA | 2256 | CG17829-RA | 610..1528 | 937..19 | 4565 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 626898..627288 | 409..19 | 1925 | 99.5 | Minus |
| X | 23542271 | X | 626504..626820 | 725..409 | 1585 | 100 | Minus |
| X | 23542271 | X | 626151..626362 | 937..726 | 1060 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:02:09 has no hits.
MXO01307.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:08 Download gff for
MXO01307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17829-PB | 483..1404 | 16..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:26 Download gff for
MXO01307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17829-RA | 610..1528 | 19..937 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:00 Download gff for
MXO01307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17829-RA | 610..1528 | 19..937 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:00 Download gff for
MXO01307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 626151..626362 | 726..937 | 100 | -> | Minus |
| X | 626504..626820 | 409..725 | 100 | -> | Minus |
| X | 626899..627288 | 19..408 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:26 Download gff for
MXO01307.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 520537..520853 | 409..725 | 100 | -> | Minus |
| arm_X | 520184..520395 | 726..937 | 100 | -> | Minus |
| arm_X | 520932..521321 | 19..408 | 99 | | Minus |
MXO01307.5prime Sequence
855 bp (729 high quality bases) assembled on 2007-03-15
> MXO01307.5prime
CAGTCGACATGCTAAGGCCCCAGTCATCAGTGCCTGCGCCTCAGCCGCCT
GGCAAGCGAAAGAAGCCCGCGGAACTGGAACTGACCTGCGGATGGCGCGA
CTGCCAGGAGATCTGCACTGGCGAGTGGAGCCTGAACGGGCATATTGGGG
ATCATCTGGAGCACTATGCGAAGGCCCAGGACGATCGGGGGGCGCATGCG
GAGCACACGGAGCATCAATGCACATGGAACTCCTGCGATTTCCGCACCGA
AAACCAGGTGGAGTTTGAACGGCATTCGTACTACCACGGCTACTACTTGA
ACCTGCTCCTGCAGGGGAAGCTGGAGTGCGATCTGCATCCGGAAATCCCC
GCCTGCACTGCTCCGGCCCGCCTCATGGAGAATTTGCCCCCCCCCCCCCA
GAACTTTCGATGTGGTTGGACAGAATGTGAGAGGGAGTTCGTTTCGATTG
TGGAGTTCCAGGACCACATCGTTAAGCACGCCCTATTCGAGTACGACATA
CAGAAGACGCCGGAAGACGAGCGGCCCAAGACGATGTGCAACTGGGCCAT
GTGCCACAAGCACATGGGCAACAAGTACCGCCTCATCGAGCACATCAGTA
CCCACTCCAACAAGAAGCAGGTGGCTTGCTTCCACTGCGGCGAACTGTTC
CGCACCAAGACTACGCTCTTTGATCACCTTAGACGCCAGCCGGAAAACAA
CACAAACAGCTTCCAGTGCGCCCAATGCTTCAAGTTCTTTGCCACCAAGA
AGCTGCTGAAGAGCCACGTGGTGCGACACGTTAACTGCTACAAGTGCACC
ATGTGCGACATGACCTGCAGCTCGGCCAGCTCGCTGACCACCCACATTCG
GTACC
MXO01307.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17829-PA | 1404 | CG17829-RA | 390..847 | 398..855 | 2240 | 99.5 | Plus |
| CG17829-PB | 1404 | CG17829-RB | 390..847 | 398..855 | 2240 | 99.5 | Plus |
| CG17829-PC | 1347 | CG17829-RC | 333..790 | 398..855 | 2240 | 99.5 | Plus |
| CG17829-PA | 1404 | CG17829-RA | 1..374 | 9..382 | 1870 | 100 | Plus |
| CG17829-PB | 1404 | CG17829-RB | 1..374 | 9..382 | 1870 | 100 | Plus |
| CG17829-PC | 1347 | CG17829-RC | 1..250 | 9..258 | 1250 | 100 | Plus |
| CG17829-PC | 1347 | CG17829-RC | 247..317 | 312..382 | 355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17829-RB | 2197 | CG17829-RB | 68..915 | 8..855 | 4090 | 98.8 | Plus |
| CG17829-RA | 2256 | CG17829-RA | 127..974 | 8..855 | 4090 | 98.8 | Plus |
| CG17829-RC | 2199 | CG17829-RC | 374..917 | 312..855 | 2570 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 625668..626362 | 8..702 | 3325 | 98.6 | Plus |
| X | 23542271 | X | 626504..626656 | 703..855 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:07:40 has no hits.
MXO01307.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:15:08 Download gff for
MXO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17829-PB | 1..847 | 9..855 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:27 Download gff for
MXO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17829-RA | 127..974 | 8..855 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:34 Download gff for
MXO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17829-RA | 127..974 | 8..855 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:34 Download gff for
MXO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 625668..626362 | 8..702 | 98 | -> | Plus |
| X | 626504..626656 | 703..855 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:27 Download gff for
MXO01307.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 519701..520395 | 8..702 | 98 | -> | Plus |
| arm_X | 520537..520689 | 703..855 | 100 | | Plus |
